Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CAH07_RS21180 Genome accession   NZ_CP021123
Coordinates   4063449..4063679 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SEM-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4058449..4068679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS21170 (CAH07_20975) spoVT 4059174..4059710 (-) 537 WP_003218365.1 stage V sporulation protein T -
  CAH07_RS21175 (CAH07_20980) mfd 4059846..4063379 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  CAH07_RS21180 (CAH07_20985) subA/fin 4063449..4063679 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  CAH07_RS21185 (CAH07_20990) pth 4063739..4064305 (-) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  CAH07_RS21190 (CAH07_20995) rplYB 4064412..4065026 (-) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  CAH07_RS21195 (CAH07_21000) prsS 4065111..4066064 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  CAH07_RS21200 (CAH07_21005) glmU 4066087..4067457 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CAH07_RS21205 (CAH07_21010) spoVG 4067650..4067943 (-) 294 WP_003218346.1 septation regulator SpoVG -
  CAH07_RS21210 (CAH07_21015) ridA 4068138..4068515 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=190616 CAH07_RS21180 WP_003243417.1 4063449..4063679(-) (subA/fin) [Bacillus subtilis strain SEM-9]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=190616 CAH07_RS21180 WP_003243417.1 4063449..4063679(-) (subA/fin) [Bacillus subtilis strain SEM-9]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment