Detailed information NTG0190610

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CAH07_RS19770
• Genome accession: NZ_CP021123
• Coordinates: 3815851..3816972 (-)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SEM-9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3810851..3821972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAH07_RS19750 (CAH07_19560)	znuC	3811361..3812056 (-)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-
CAH07_RS19755 (CAH07_19565)	znuA	3812111..3813070 (-)	960	WP_029317219.1	metal ABC transporter substrate-binding protein	-
CAH07_RS19760 (CAH07_19570)	ycdG	3813258..3814943 (-)	1686	WP_101172108.1	alpha-glucosidase	-
CAH07_RS19765 (CAH07_19575)	ycdF	3814968..3815744 (-)	777	WP_003234739.1	SDR family oxidoreductase	-
CAH07_RS19770 (CAH07_19580)	rapF	3815851..3816972 (-)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
CAH07_RS19775 (CAH07_19585)	cwlK	3817095..3817598 (+)	504	WP_029317221.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
CAH07_RS19780 (CAH07_19590)	ycdC	3817606..3818967 (-)	1362	WP_029317222.1	YcdB/YcdC domain-containing protein	-
CAH07_RS19785 (CAH07_19600)	ycdB	3819154..3820575 (-)	1422	WP_033883138.1	YcdB/YcdC domain-containing protein	-
CAH07_RS19790	-	3820749..3820880 (+)	132	WP_003246334.1	hypothetical protein	-
CAH07_RS19795 (CAH07_19605)	ycdA	3820903..3821967 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=190610 CAH07_RS19770 WP_015715201.1 3815851..3816972(-) (rapF) [Bacillus subtilis strain SEM-9]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=190610 CAH07_RS19770 WP_015715201.1 3815851..3816972(-) (rapF) [Bacillus subtilis strain SEM-9]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATATGATTTAGAAGATATGGAAGAGAATCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACTCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405