Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   CAH07_RS19015 Genome accession   NZ_CP021123
Coordinates   3644876..3645310 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SEM-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3639876..3650310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS19000 (CAH07_18820) epsK 3640505..3641356 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  CAH07_RS19005 (CAH07_18825) ephJ 3641337..3642425 (-) 1089 WP_101172137.1 lipoprotein YdaJ -
  CAH07_RS19010 (CAH07_18830) topB 3642628..3644811 (-) 2184 WP_076458431.1 DNA topoisomerase III -
  CAH07_RS19015 (CAH07_18835) lrpC 3644876..3645310 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  CAH07_RS19020 (CAH07_18840) ydzA 3645496..3645786 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  CAH07_RS19025 (CAH07_18845) amj 3645831..3646640 (-) 810 WP_061891247.1 lipid II flippase Amj -
  CAH07_RS19030 (CAH07_18850) ydaG 3647146..3647568 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  CAH07_RS19035 (CAH07_18855) ydaF 3647646..3648197 (-) 552 WP_003246691.1 GNAT family protein -
  CAH07_RS19040 (CAH07_18860) lyxE 3648283..3648786 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  CAH07_RS19045 (CAH07_18865) ydaD 3648802..3649662 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=190599 CAH07_RS19015 WP_003246585.1 3644876..3645310(-) (lrpC) [Bacillus subtilis strain SEM-9]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=190599 CAH07_RS19015 WP_003246585.1 3644876..3645310(-) (lrpC) [Bacillus subtilis strain SEM-9]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCTCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment