Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   CAH07_RS12060 Genome accession   NZ_CP021123
Coordinates   2338834..2339265 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SEM-9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333834..2344265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS12050 (CAH07_11890) hexA 2335326..2337902 (-) 2577 WP_029317805.1 DNA mismatch repair protein MutS Machinery gene
  CAH07_RS12055 (CAH07_11895) cotE 2338035..2338580 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  CAH07_RS12060 (CAH07_11900) ymcA 2338834..2339265 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  CAH07_RS12065 (CAH07_11905) miaB 2339267..2340796 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CAH07_RS12070 (CAH07_11910) kbl 2340944..2342122 (-) 1179 WP_029317804.1 glycine C-acetyltransferase -
  CAH07_RS12075 (CAH07_11915) tdh 2342135..2343178 (-) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  CAH07_RS12080 (CAH07_11920) spoVS 2343444..2343704 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=190547 CAH07_RS12060 WP_003231834.1 2338834..2339265(-) (ymcA) [Bacillus subtilis strain SEM-9]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=190547 CAH07_RS12060 WP_003231834.1 2338834..2339265(-) (ymcA) [Bacillus subtilis strain SEM-9]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1