Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CAH07_RS11565 Genome accession   NZ_CP021123
Coordinates   2191088..2191705 (+) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain SEM-9     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2186088..2196705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS11530 (CAH07_11380) ynzD 2186330..2186503 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  CAH07_RS11535 (CAH07_11385) yneF 2186577..2186795 (-) 219 WP_003221221.1 YneF family protein -
  CAH07_RS11540 (CAH07_11390) sirA 2186881..2187327 (-) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  CAH07_RS11545 (CAH07_11395) recP/tkt 2187480..2189483 (-) 2004 WP_033885144.1 transketolase Machinery gene
  CAH07_RS11550 (CAH07_11400) ynzC 2189652..2189885 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  CAH07_RS11555 (CAH07_11405) dinL 2189949..2190602 (-) 654 WP_015714011.1 recombinase family protein -
  CAH07_RS11560 (CAH07_11410) yneA 2190621..2190938 (-) 318 WP_015252003.1 cell division suppressor protein YneA -
  CAH07_RS11565 (CAH07_11415) dinR/lexA 2191088..2191705 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  CAH07_RS21745 - 2192057..2192333 (-) 277 Protein_2256 hypothetical protein -
  CAH07_RS11575 (CAH07_11425) fosM 2192242..2192676 (-) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  CAH07_RS11580 (CAH07_11430) - 2192884..2193333 (+) 450 WP_176551648.1 YndM family protein -
  CAH07_RS11585 (CAH07_11435) pghL 2193360..2194118 (-) 759 WP_015714006.1 gamma-polyglutamate hydrolase PghL -
  CAH07_RS11590 (CAH07_11440) - 2194343..2194657 (-) 315 WP_003245621.1 hypothetical protein -
  CAH07_RS11595 (CAH07_11445) yndJ 2194735..2196375 (-) 1641 WP_038429036.1 YndJ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=190544 CAH07_RS11565 WP_003238209.1 2191088..2191705(+) (dinR/lexA) [Bacillus subtilis strain SEM-9]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=190544 CAH07_RS11565 WP_003238209.1 2191088..2191705(+) (dinR/lexA) [Bacillus subtilis strain SEM-9]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment