Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CAH07_RS08290 Genome accession   NZ_CP021123
Coordinates   1582709..1583836 (-) Length   375 a.a.
NCBI ID   WP_139451208.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577709..1588836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS08255 (CAH07_08150) - 1578640..1579119 (+) 480 WP_004399085.1 hypothetical protein -
  CAH07_RS08260 (CAH07_08155) - 1579135..1579497 (+) 363 WP_003229947.1 hypothetical protein -
  CAH07_RS08265 - 1579494..1579640 (-) 147 WP_009967791.1 hypothetical protein -
  CAH07_RS08270 (CAH07_08160) yqcF 1579758..1580336 (-) 579 WP_015714310.1 type VII secretion system immunity protein YqcF -
  CAH07_RS08275 (CAH07_08165) yqcG 1580351..1581946 (-) 1596 WP_015714309.1 LXG family T7SS effector endonuclease toxin YqcG -
  CAH07_RS08280 (CAH07_08170) - 1582316..1582475 (-) 160 Protein_1605 hypothetical protein -
  CAH07_RS08285 (CAH07_08175) phrE 1582585..1582719 (-) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  CAH07_RS08290 (CAH07_08180) rapC 1582709..1583836 (-) 1128 WP_139451208.1 response regulator aspartate phosphatase RapE Regulator
  CAH07_RS08295 (CAH07_08185) yqcI 1584279..1585043 (+) 765 WP_017696291.1 YqcI/YcgG family protein -
  CAH07_RS08300 (CAH07_08190) arsR 1585415..1585732 (+) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  CAH07_RS08305 (CAH07_08195) arsK 1585791..1586231 (+) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  CAH07_RS08310 (CAH07_08200) acr3 1586254..1587294 (+) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  CAH07_RS08315 (CAH07_08205) arsC 1587306..1587725 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  CAH07_RS21725 (CAH07_08210) - 1588080..1588258 (+) 179 Protein_1613 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44662.53 Da        Isoelectric Point: 7.8083

>NTDB_id=190519 CAH07_RS08290 WP_139451208.1 1582709..1583836(-) (rapC) [Bacillus subtilis strain SEM-9]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTMPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYHDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=190519 CAH07_RS08290 WP_139451208.1 1582709..1583836(-) (rapC) [Bacillus subtilis strain SEM-9]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TAATGGCCTTCCGCCATAAAATCATGTTGGAATACACGATGCCATCCGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATATAACATCTATAAAAAACACGAGCTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TCATGACCTTGAAAATCATGAGAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCTGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGTTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCATTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATTAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_12)

(183-246)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384