Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   CAC01_RS25085 Genome accession   NZ_CP021118
Coordinates   5898299..5900401 (-) Length   700 a.a.
NCBI ID   WP_007828531.1    Uniprot ID   -
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5893299..5905401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS25065 (CAC01_24975) pgl 5893717..5894499 (-) 783 WP_095683346.1 6-phosphogluconolactonase -
  CAC01_RS25070 (CAC01_24980) opcA 5894496..5895608 (-) 1113 WP_093855036.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  CAC01_RS25075 (CAC01_24985) zwf 5895605..5897137 (-) 1533 WP_007828528.1 glucose-6-phosphate dehydrogenase -
  CAC01_RS25080 (CAC01_24990) tal 5897143..5898261 (-) 1119 WP_095683347.1 transaldolase -
  CAC01_RS25085 (CAC01_24995) recP/tkt 5898299..5900401 (-) 2103 WP_007828531.1 transketolase Machinery gene
  CAC01_RS25095 (CAC01_25005) - 5900911..5901852 (+) 942 WP_007828535.1 heme o synthase -
  CAC01_RS25100 (CAC01_25010) - 5901951..5902322 (+) 372 WP_043256424.1 hypothetical protein -
  CAC01_RS25105 (CAC01_25020) - 5902541..5903653 (+) 1113 WP_095684037.1 amidohydrolase -
  CAC01_RS25110 (CAC01_25025) - 5903667..5904701 (-) 1035 WP_029396377.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75415.20 Da        Isoelectric Point: 5.1298

>NTDB_id=190458 CAC01_RS25085 WP_007828531.1 5898299..5900401(-) (recP/tkt) [Streptomyces sp. CLI2509 strain CLI2905]
MSTKPTTTDFEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPDWTGRDRFVLSAGHSS
LTLYTQLYLAGFGLELADLEAFRTWGSKTPGHPEYGHTKGVETTTGPLGQGVANAVGMAMAARYERGLFDPDAPRGTSPF
DHHIYAIAGDGCLQEGISAEASSLAGHQKLGNLILLWDDNHISIEGDTETAVSEETTKRYEAYGWHVQRVEPKADGDLDP
AALYAAIEAAKAETERPSFIAMRSIIAWPAPHAQNTEAAHGSALGEEEVAATKRVLGFDPEKHFDVADEVLAHTRGALER
GKAQRAEWEKGFADWRAAHPEHAARFDRVAATELPEGWEEHLPVFETGTSLATRAASGKILQALGPVIPELWGGSADLAG
SNNTTIDKTSSFLPEGNPLPEADPYGRTVHFGIREHAMAAELNGITLHGNTRAFGGTFLTFSDYMRNAVRLSALMTLPVT
YVFTHDSIGLGEDGPTHQPVEHVASLRAIPGLHVVRPADANETAIAWREVLRRYTKVYGEGHPHALILTRQGVPTYAPNE
DAAKGGYVLLDAEDAEGRTVTPDVVLIGTGSEVQLAVEARELLRAQGVAARVVSMPSVEWFEEQDAGYRESVLPAAVKAR
VAVEAGIGLTWHRFVGDAGRIVSLEHFGASADGKLLFREYGFTGEAVAAAARESLDAARR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=190458 CAC01_RS25085 WP_007828531.1 5898299..5900401(-) (recP/tkt) [Streptomyces sp. CLI2509 strain CLI2905]
GTGAGCACCAAGCCGACCACCACAGATTTCGAGTGGACCGAACTGGATCAGCGGGCCGTAGACACCGCGCGTGTACTGGC
CGCGGACGCCGTGCAGAAGGTCGGCAACGGCCATCCCGGTACGGCGATGAGCCTGGCCCCGGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCCGCCGACCCGGACTGGACCGGGCGCGACCGTTTCGTGCTGTCCGCGGGCCACTCCTCG
CTCACGCTCTACACGCAGCTCTACCTGGCCGGTTTCGGCCTGGAGCTCGCGGACCTGGAAGCCTTCCGCACCTGGGGCTC
GAAGACCCCCGGGCACCCGGAGTACGGGCACACCAAGGGCGTCGAGACGACGACCGGGCCGCTCGGCCAGGGCGTGGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGGTACGAGCGCGGGCTCTTCGACCCCGACGCGCCGCGCGGCACCTCGCCGTTC
GACCACCACATCTACGCGATCGCCGGGGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGCTCGCGGGCCA
CCAGAAGCTCGGCAACCTCATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGACGGCCGTCTCCG
AGGAGACCACCAAGCGCTACGAGGCGTACGGCTGGCACGTGCAGCGCGTCGAGCCGAAGGCCGACGGCGACCTGGACCCG
GCCGCCCTCTACGCCGCGATCGAGGCCGCGAAGGCCGAGACGGAGCGCCCCTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCGGCCCCGCACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGAGGAGGAGGTCGCCGCGACCAAGC
GTGTCCTCGGCTTCGACCCCGAGAAGCACTTCGACGTCGCGGACGAGGTCCTCGCGCACACCCGCGGGGCCCTGGAGCGC
GGCAAGGCGCAGCGCGCCGAGTGGGAGAAGGGCTTCGCCGACTGGCGCGCCGCCCACCCCGAGCACGCCGCGCGCTTCGA
CCGCGTCGCCGCCACCGAGCTGCCCGAGGGCTGGGAGGAGCACCTCCCCGTCTTCGAGACCGGCACCTCGCTCGCCACGC
GCGCCGCCTCCGGCAAGATCCTCCAGGCGCTCGGCCCGGTGATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCCGAGGGCAACCCGCTCCCCGAGGCCGACCCGTACGGCCG
TACGGTGCACTTCGGTATCCGCGAGCACGCGATGGCCGCCGAGCTGAACGGCATCACGCTGCACGGCAACACGCGCGCCT
TCGGGGGGACGTTCCTGACGTTCTCCGACTACATGCGCAACGCGGTCCGCCTCTCCGCACTCATGACGCTGCCGGTCACG
TACGTCTTCACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAGCACGTCGCCTCGCTGCG
CGCCATCCCCGGCCTCCACGTGGTCCGCCCGGCCGACGCGAACGAGACCGCGATCGCGTGGCGCGAGGTCCTGCGCCGCT
ACACGAAGGTCTACGGCGAGGGCCACCCGCACGCGCTGATCCTCACCCGGCAGGGCGTGCCCACGTACGCGCCGAACGAG
GACGCGGCCAAGGGCGGCTACGTCCTGCTCGACGCCGAGGACGCCGAGGGGAGGACCGTCACCCCCGACGTCGTCCTCAT
CGGCACCGGCTCCGAGGTGCAGCTCGCCGTCGAGGCGCGTGAGCTGCTCCGCGCCCAGGGTGTCGCCGCGCGTGTCGTGT
CGATGCCCTCGGTCGAGTGGTTCGAGGAGCAGGACGCCGGGTACCGGGAGTCCGTGCTCCCCGCCGCTGTCAAGGCGCGC
GTCGCGGTCGAGGCCGGTATCGGCCTGACCTGGCACCGCTTCGTGGGCGACGCGGGCCGCATCGTCTCGCTGGAGCACTT
CGGTGCCTCGGCGGACGGCAAGCTGCTGTTCCGCGAGTACGGCTTCACCGGCGAGGCGGTCGCCGCCGCCGCGCGGGAAT
CCCTCGACGCCGCCCGGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-535)

Transketolase, C-terminal domain (Transketolase_C)

(581-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.672

97.857

0.437

Multiple sequence alignment