Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L47_RS14410 Genome accession   NZ_CP016647
Coordinates   1891669..1892133 (+) Length   154 a.a.
NCBI ID   WP_195182838.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22809     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886669..1897133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L47_RS14410 comE 1891669..1892133 (+) 465 WP_195182838.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6L47_RS10010 (A6L47_10010) comP 1892221..1892670 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6L47_RS14850 (A6L47_10015) - 1892760..1893100 (-) 341 Protein_1852 5'-nucleotidase -
  A6L47_RS10020 (A6L47_10020) - 1893212..1893424 (-) 213 WP_002224145.1 SWIM zinc finger family protein -
  A6L47_RS10025 (A6L47_10025) - 1893656..1894129 (+) 474 Protein_1854 transposase -
  A6L47_RS10045 (A6L47_10045) - 1895331..1896788 (-) 1458 WP_002258745.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16484.80 Da        Isoelectric Point: 10.7894

>NTDB_id=190103 A6L47_RS14410 WP_195182838.1 1891669..1892133(+) (comE) [Neisseria meningitidis strain M22809]
MLCPEKMSVMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190103 A6L47_RS14410 WP_195182838.1 1891669..1892133(+) (comE) [Neisseria meningitidis strain M22809]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment