Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxS   Type   Regulator
Locus tag   B9T41_RS11620 Genome accession   NZ_CP020956
Coordinates   2213744..2214214 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain C8879     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2208744..2219214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9T41_RS11600 (B9T41_11600) coaW 2209053..2209856 (+) 804 WP_000862727.1 type II pantothenate kinase -
  B9T41_RS11605 (B9T41_11605) - 2209986..2210657 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  B9T41_RS11610 (B9T41_11610) - 2211056..2212249 (-) 1194 WP_000183726.1 hypothetical protein -
  B9T41_RS11615 (B9T41_11615) - 2212249..2213433 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  B9T41_RS11620 (B9T41_11620) luxS 2213744..2214214 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  B9T41_RS11625 (B9T41_11625) - 2214366..2214716 (-) 351 WP_001024035.1 membrane protein -
  B9T41_RS11630 (B9T41_11630) - 2214730..2216031 (-) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  B9T41_RS11640 (B9T41_11640) deoC 2216310..2216972 (-) 663 WP_001083316.1 deoxyribose-phosphate aldolase -
  B9T41_RS11645 (B9T41_11645) deoD 2217287..2217997 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  B9T41_RS11650 (B9T41_11650) - 2218118..2218561 (-) 444 WP_000070866.1 Dps family protein -
  B9T41_RS11655 (B9T41_11655) - 2218761..2219174 (-) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence


Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=190049 B9T41_RS11620 WP_000164421.1 2213744..2214214(+) (luxS) [Staphylococcus aureus strain C8879]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=190049 B9T41_RS11620 WP_000164421.1 2213744..2214214(+) (luxS) [Staphylococcus aureus strain C8879]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains


Predicted by InterProScan.

(5-148)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P65329

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404


Multiple sequence alignment