Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9W17_RS08295 Genome accession   NZ_CP020933
Coordinates   1684808..1685284 (-) Length   158 a.a.
NCBI ID   WP_001360063.1    Uniprot ID   -
Organism   Escherichia coli strain HB-Coli0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679808..1690284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W17_RS08265 (B9W17_08700) - 1681959..1682804 (-) 846 WP_001280427.1 DUF4942 domain-containing protein -
  B9W17_RS08270 (B9W17_08705) - 1682889..1683086 (-) 198 WP_000445281.1 DUF957 domain-containing protein -
  B9W17_RS08275 (B9W17_08710) - 1683106..1683594 (-) 489 WP_000761669.1 DUF5983 family protein -
  B9W17_RS08280 (B9W17_08715) - 1683591..1683968 (-) 378 WP_001094443.1 TA system toxin CbtA family protein -
  B9W17_RS08285 (B9W17_08720) - 1684058..1684426 (-) 369 WP_085704244.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B9W17_RS08290 (B9W17_08725) - 1684500..1684721 (-) 222 WP_000692176.1 DUF987 domain-containing protein -
  B9W17_RS08295 (B9W17_08730) radC 1684808..1685284 (-) 477 WP_001360063.1 RadC family protein Machinery gene
  B9W17_RS08300 (B9W17_08735) - 1685300..1685785 (-) 486 WP_000206656.1 antirestriction protein -
  B9W17_RS08305 (B9W17_08740) - 1685877..1686695 (-) 819 WP_021520251.1 DUF932 domain-containing protein -
  B9W17_RS08315 (B9W17_08745) - 1687022..1689868 (-) 2847 WP_085704030.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17644.24 Da        Isoelectric Point: 7.0394

>NTDB_id=189933 B9W17_RS08295 WP_001360063.1 1684808..1685284(-) (radC) [Escherichia coli strain HB-Coli0]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=189933 B9W17_RS08295 WP_001360063.1 1684808..1685284(-) (radC) [Escherichia coli strain HB-Coli0]
ATGCAGCAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCATCCGTCCGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment