Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9W17_RS06175 Genome accession   NZ_CP020933
Coordinates   1277402..1277878 (-) Length   158 a.a.
NCBI ID   WP_001186715.1    Uniprot ID   A0ABR6U2I4
Organism   Escherichia coli strain HB-Coli0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272402..1282878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W17_RS06125 (B9W17_06550) yghD 1272977..1273513 (+) 537 WP_000942799.1 GspM family type II secretion system protein YghD -
  B9W17_RS06135 (B9W17_06555) - 1273928..1274254 (-) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  B9W17_RS06140 (B9W17_06560) - 1274251..1274514 (-) 264 WP_025492088.1 type II toxin-antitoxin system ParD family antitoxin -
  B9W17_RS06145 (B9W17_06565) - 1274586..1275452 (-) 867 WP_032153714.1 DUF4942 domain-containing protein -
  B9W17_RS06150 (B9W17_06570) - 1275537..1275734 (-) 198 WP_000839265.1 DUF957 domain-containing protein -
  B9W17_RS06155 (B9W17_06575) - 1275746..1276237 (-) 492 WP_023155722.1 DUF5983 family protein -
  B9W17_RS06160 (B9W17_06580) - 1276234..1276611 (-) 378 WP_000854735.1 TA system toxin CbtA family protein -
  B9W17_RS06165 (B9W17_06585) cbeA 1276658..1277032 (-) 375 WP_032153712.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B9W17_RS06170 (B9W17_06590) - 1277112..1277333 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  B9W17_RS06175 (B9W17_06595) radC 1277402..1277878 (-) 477 WP_001186715.1 RadC family protein Machinery gene
  B9W17_RS06180 (B9W17_06600) - 1277894..1278379 (-) 486 WP_032153711.1 antirestriction protein -
  B9W17_RS06185 (B9W17_06605) - 1278471..1279289 (-) 819 WP_001234693.1 DUF932 domain-containing protein -
  B9W17_RS06190 (B9W17_06610) - 1279380..1279589 (-) 210 WP_023155727.1 DUF905 family protein -
  B9W17_RS06195 (B9W17_06615) - 1279619..1280296 (-) 678 WP_023155728.1 hypothetical protein -
  B9W17_RS06200 (B9W17_06620) - 1280415..1281299 (-) 885 WP_024166630.1 GTPase -
  B9W17_RS06205 (B9W17_06625) - 1281406..1282338 (+) 933 WP_023155730.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=189925 B9W17_RS06175 WP_001186715.1 1277402..1277878(-) (radC) [Escherichia coli strain HB-Coli0]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=189925 B9W17_RS06175 WP_001186715.1 1277402..1277878(-) (radC) [Escherichia coli strain HB-Coli0]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTAATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGATCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment