Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   B9L64_RS18670 Genome accession   NZ_CP020915
Coordinates   3623338..3626229 (+) Length   963 a.a.
NCBI ID   WP_110109644.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3618338..3631229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS18645 yhaR 3618752..3619519 (+) 768 WP_029726320.1 enoyl-CoA hydratase -
  B9L64_RS18650 yhzD 3619540..3619725 (-) 186 WP_015715596.1 YhzD family protein -
  B9L64_RS18655 yhaQ 3619852..3620748 (+) 897 WP_003233262.1 ABC transporter ATP-binding protein -
  B9L64_RS18660 yhaP 3620741..3622000 (+) 1260 WP_029726319.1 ABC transporter permease -
  B9L64_RS18665 yhaO 3622107..3623333 (+) 1227 WP_110109607.1 exonuclease SbcCD subunit D -
  B9L64_RS18670 sbcE 3623338..3626229 (+) 2892 WP_110109644.1 DNA repair/recombination ATPase SbcE Machinery gene
  B9L64_RS18675 yhaM 3626303..3627247 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  B9L64_RS18680 yhaL 3627372..3627584 (+) 213 WP_003233252.1 sporulation protein YhaL -
  B9L64_RS18685 prsA 3627625..3628503 (-) 879 WP_003245079.1 peptidylprolyl isomerase PrsA -
  B9L64_RS18690 yhzE1 3628663..3628749 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  B9L64_RS18695 yhzE2 3628874..3628960 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  B9L64_RS18700 - 3629013..3629195 (-) 183 WP_024571667.1 hypothetical protein -
  B9L64_RS18705 yhaJ 3629303..3629821 (-) 519 WP_003245590.1 DUF3267 domain-containing protein -
  B9L64_RS18710 yhaI 3630029..3630370 (+) 342 WP_009966921.1 YhaI family protein -
  B9L64_RS18715 scoC 3630367..3630978 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111191.31 Da        Isoelectric Point: 6.2190

>NTDB_id=189861 B9L64_RS18670 WP_110109644.1 3623338..3626229(+) (sbcE) [Bacillus subtilis strain 50-1]
MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQMRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRGTRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMKELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYIKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGEHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFLPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSMLPFQLDDSFVHFDQERLKRVLHVLYDLSKGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=189861 B9L64_RS18670 WP_110109644.1 3623338..3626229(+) (sbcE) [Bacillus subtilis strain 50-1]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTGACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTATACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGCACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCATGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCTGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCTGCTGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGATGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGGGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAAAGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATATAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGAGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTCTTCCTCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGATGGGTCAATGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCAAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.546

100

0.985