Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   B9L64_RS17515 Genome accession   NZ_CP020915
Coordinates   3410569..3411285 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain 50-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3405569..3416285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS17500 yfkQ 3405643..3407184 (-) 1542 WP_110109589.1 spore germination protein -
  B9L64_RS17505 treP 3407377..3408789 (+) 1413 WP_032722999.1 PTS system trehalose-specific EIIBC component -
  B9L64_RS17510 treC 3408860..3410548 (+) 1689 WP_032730624.1 alpha,alpha-phosphotrehalase -
  B9L64_RS17515 treR 3410569..3411285 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  B9L64_RS17520 hypO 3411425..3412090 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=189855 B9L64_RS17515 WP_003233679.1 3410569..3411285(+) (treR) [Bacillus subtilis strain 50-1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=189855 B9L64_RS17515 WP_003233679.1 3410569..3411285(+) (treR) [Bacillus subtilis strain 50-1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATTCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTAGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416