Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B9L64_RS16205 Genome accession   NZ_CP020915
Coordinates   3143674..3144315 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain 50-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138674..3149315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS16175 ydfE 3139869..3140492 (-) 624 WP_003243530.1 flavin reductase family protein -
  B9L64_RS16180 ydfF 3140582..3141262 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  B9L64_RS16185 ydfG 3141342..3141785 (-) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  B9L64_RS16190 - 3141871..3142050 (-) 180 WP_010886421.1 hypothetical protein -
  B9L64_RS16195 - 3142047..3142190 (-) 144 WP_003243880.1 hypothetical protein -
  B9L64_RS16200 ydfH 3142458..3143681 (+) 1224 WP_010886422.1 two-component system sensor histidine kinase YdfH -
  B9L64_RS16205 vraR 3143674..3144315 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  B9L64_RS16210 pleJ 3144431..3146605 (+) 2175 WP_003243548.1 MMPL family transporter -
  B9L64_RS16215 cesA 3147017..3147919 (-) 903 WP_003242638.1 carboxylesterase -
  B9L64_RS16220 ydfK 3148121..3148810 (-) 690 WP_003242513.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=189847 B9L64_RS16205 WP_003244318.1 3143674..3144315(+) (vraR) [Bacillus subtilis strain 50-1]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=189847 B9L64_RS16205 WP_003244318.1 3143674..3144315(+) (vraR) [Bacillus subtilis strain 50-1]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTAGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment