Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   B9L64_RS15640 Genome accession   NZ_CP020915
Coordinates   3050380..3050814 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3045380..3055814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS15610 ydaD 3046027..3046887 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  B9L64_RS15615 lyxE 3046903..3047406 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  B9L64_RS15620 ydaF 3047494..3048045 (+) 552 WP_014478866.1 GNAT family protein -
  B9L64_RS15625 ydaG 3048123..3048545 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  B9L64_RS15630 amj 3049051..3049860 (+) 810 WP_003234394.1 lipid II flippase Amj -
  B9L64_RS15635 ydzA 3049905..3050195 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  B9L64_RS15640 lrpC 3050380..3050814 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  B9L64_RS15645 topB 3050879..3053062 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  B9L64_RS15650 ephJ 3053264..3054352 (+) 1089 WP_003246551.1 lipoprotein -
  B9L64_RS15655 epsK 3054333..3055184 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=189846 B9L64_RS15640 WP_003246585.1 3050380..3050814(+) (lrpC) [Bacillus subtilis strain 50-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=189846 B9L64_RS15640 WP_003246585.1 3050380..3050814(+) (lrpC) [Bacillus subtilis strain 50-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1