Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   B9L64_RS13540 Genome accession   NZ_CP020915
Coordinates   2634414..2634644 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2629414..2639644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS13510 ridA 2629579..2629956 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  B9L64_RS13515 spoVG 2630150..2630443 (+) 294 WP_003218346.1 septation regulator SpoVG -
  B9L64_RS13520 glmU 2630636..2632006 (+) 1371 WP_110109557.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  B9L64_RS13525 prsS 2632029..2632982 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  B9L64_RS13530 rplYB 2633067..2633681 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  B9L64_RS13535 pth 2633788..2634354 (+) 567 WP_046380723.1 aminoacyl-tRNA hydrolase -
  B9L64_RS13540 subA/fin 2634414..2634644 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  B9L64_RS13545 mfd 2634714..2638247 (+) 3534 WP_021479723.1 transcription-repair coupling factor -
  B9L64_RS13550 spoVT 2638383..2638919 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=189829 B9L64_RS13540 WP_003243417.1 2634414..2634644(+) (subA/fin) [Bacillus subtilis strain 50-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=189829 B9L64_RS13540 WP_003243417.1 2634414..2634644(+) (subA/fin) [Bacillus subtilis strain 50-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1