Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   B9L64_RS00465 Genome accession   NZ_CP020915
Coordinates   85022..85471 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain 50-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 80022..90471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS00425 ctaE 80039..80662 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  B9L64_RS00430 ctaF 80665..80997 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  B9L64_RS00435 ctaG 81024..81917 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  B9L64_RS00440 ylbA 81949..82311 (-) 363 WP_003232238.1 YugN family protein -
  B9L64_RS00445 ylbB 82451..82897 (+) 447 WP_003221362.1 CBS domain-containing protein -
  B9L64_RS00450 ylbC 82981..84021 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  B9L64_RS00455 ylbD 84253..84651 (+) 399 WP_003232233.1 YlbD family protein -
  B9L64_RS00460 ylbE 84667..84906 (+) 240 WP_003232231.1 YlbE-like family protein -
  B9L64_RS00465 ylbF 85022..85471 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  B9L64_RS00470 ylbG 85526..85798 (+) 273 WP_015715839.1 YlbG family protein -
  B9L64_RS00475 rsmD 86121..86675 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  B9L64_RS00480 coaD 86680..87165 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  B9L64_RS00485 spoVV 87176..88402 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  B9L64_RS00490 ylbK 88583..89365 (+) 783 WP_003232221.1 patatin family protein -
  B9L64_RS00495 sepM 89367..90392 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=189736 B9L64_RS00465 WP_003221370.1 85022..85471(+) (ylbF) [Bacillus subtilis strain 50-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=189736 B9L64_RS00465 WP_003221370.1 85022..85471(+) (ylbF) [Bacillus subtilis strain 50-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1