Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   B9J09_RS11485 Genome accession   NZ_CP020870
Coordinates   2400732..2402933 (+) Length   733 a.a.
NCBI ID   WP_010895103.1    Uniprot ID   Q9PA31
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2395732..2407933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS11465 (B9J09_11465) - 2397080..2398441 (-) 1362 WP_046420849.1 MATE family efflux transporter -
  B9J09_RS11475 (B9J09_11475) - 2398763..2399332 (-) 570 WP_046420852.1 DUF3106 domain-containing protein -
  B9J09_RS11480 (B9J09_11480) - 2399329..2400294 (-) 966 WP_046420855.1 sigma-70 region 4 domain-containing protein -
  B9J09_RS11485 (B9J09_11485) priA 2400732..2402933 (+) 2202 WP_010895103.1 primosomal protein N' Machinery gene
  B9J09_RS11490 (B9J09_11490) rpoH 2404433..2405299 (-) 867 WP_031337152.1 RNA polymerase sigma factor RpoH -
  B9J09_RS11495 (B9J09_11495) ung 2405433..2406194 (-) 762 WP_010895106.1 uracil-DNA glycosylase -
  B9J09_RS11500 (B9J09_11500) - 2406200..2407048 (-) 849 WP_046420859.1 response regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 81121.35 Da        Isoelectric Point: 9.5234

>NTDB_id=189732 B9J09_RS11485 WP_010895103.1 2400732..2402933(+) (priA) [Xylella fastidiosa subsp. pauca strain De Donno]
MPPTILRVALPIPLPQCFDYLPPSGIPLPDSTLGCRVRVPFGKRELIGVVVELPSAEMSVPLREAFAWIDRIPILDGELA
QSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWAWRLTETGRTAAPKLRRNSRSAQLAELLTTSDQTEDALNTR
MNHWRTVARNLTKRGYVERIKKPTTVSLIIQTTSNTVPVLNTEQQKAVETLNANVGFKTYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADNERARVWAAARCGEARLVLGTRSAVFTPLPHAGLIIVD
EEHDTSYKQQDGIRYNARDFALVRGKALNVPVILGSATPSLESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLK
DGLSPEVLTGINATLARDEQVLVFKNRRGYSPVLLCHDCGWTATCQQCSTSVHRTPMTVYTGGTYLQCHHCDARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDALKTQFTELGNAAGILVGTQILAKGHHLPRLTMVVV
VGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWLQTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHL
ALLRAEAKDTTSTQQFLATVRKHIPIDNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNTLHRTLNVLIPAIHALPEARR
VRWSLDVDPVDLY

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=189732 B9J09_RS11485 WP_010895103.1 2400732..2402933(+) (priA) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGCCCCCTACGATCCTACGTGTGGCGTTGCCAATCCCTTTACCGCAATGCTTCGACTATCTGCCGCCAAGCGGCATACC
ACTCCCAGATTCAACCTTAGGCTGCCGCGTACGTGTGCCATTCGGGAAACGTGAGCTGATCGGTGTAGTGGTCGAACTTC
CATCAGCCGAAATGTCGGTACCATTACGCGAGGCATTCGCCTGGATTGACCGTATACCAATTCTAGATGGCGAGCTGGCA
CAATCGTTACAGTGGCTGTCACACTACACGCATACCCCACTCGGTGAGATATTAGCTACGGCTCTTCCCGGGCTGTTACG
TCATGGTAAACCCTTACCAGAGACCTGGACCTGCTGGGCTTGGCGTCTAACCGAAACCGGGCGCACTGCCGCTCCCAAGC
TGCGTCGCAACAGCCGCTCAGCACAACTGGCTGAATTACTCACCACCAGTGATCAAACGGAAGATGCACTTAACACTCGG
ATGAATCACTGGCGCACAGTTGCACGCAACCTAACCAAGCGTGGTTATGTCGAGCGCATCAAGAAACCTACAACCGTATC
TCTAATCATCCAGACCACCAGCAACACCGTACCTGTACTCAACACTGAACAACAGAAAGCAGTTGAGACACTAAACGCTA
ACGTAGGCTTCAAAACTTATCTGCTAGATGGAGTCACCGGCAGCGGTAAAACAGAAGTCTACCTACAAGCCATCGCTACC
TGCTTAGCTGCGAGTAAGCAAGCATTGGTCTTAGTCCCTGAGATCGGCTTGACACCTCAACTTCTAACCAACTTCCATGC
CCGCCTCGGAATACCCGTGCATGCCCTGCACTCCAAATTGGCAGACAACGAACGCGCCCGCGTGTGGGCGGCGGCCCGAT
GTGGCGAGGCACGACTGGTACTAGGAACTCGCTCAGCGGTGTTCACACCCCTACCTCATGCCGGACTAATTATAGTAGAT
GAGGAACACGACACGAGTTACAAGCAGCAAGACGGGATACGTTACAACGCGCGCGATTTCGCATTGGTGCGCGGCAAGGC
ACTGAACGTACCAGTCATCCTCGGGAGTGCCACTCCGTCACTGGAATCACTGTACAACGCGCATAACGGACGCTACAAGC
ACCTCCGCCTCACCTACCGTGCCGGTCAAGCGTATGCCCCTCAGGTGCGCGTACTAGACGTACGCAAAAGACCACTGAAA
GACGGCCTATCACCCGAGGTATTAACAGGCATTAACGCAACTTTAGCGCGTGATGAGCAGGTACTCGTATTCAAGAACCG
GCGCGGCTATTCACCAGTGTTGCTATGTCACGACTGCGGCTGGACCGCTACCTGTCAGCAGTGCAGCACATCAGTGCACC
GCACACCAATGACTGTATACACCGGCGGAACCTACTTACAGTGCCACCACTGCGACGCACGCCAGCCAATGCCACTATCA
TGCCCAGACTGCGGCAGTACAGCGCTACAGCCACAGGGAATAGGCACTGAACGCCTAGAAGCACGCCTGATTGAGGCTTT
CCCTAAACATCCTGTGGTGCGTATTGATCGCAACACAACCCAGCACCGCGACGCACTAAAAACCCAATTCACCGAACTCG
GCAATGCCGCTGGCATTTTAGTAGGCACCCAGATTCTAGCCAAAGGGCATCACCTACCACGCTTAACGATGGTCGTCGTC
GTTGGAATCGACGAAGGCCTATTCTCAGCCGACTTCCGCGCCACTGAAAAGCTCTCCCAGCAACTGATCCAAGTTGCTGG
CCGCGCTGGCCGTGCTAAACATGCCGGAGAAGTCTGGCTACAAACTCACCACCCTGATCACCCACTGTTGCAAACACTAA
TCAACGGCGGCTACCACACCTTTGCTAATACGGAGCTACAACAACGCCAAGCCGCTGGGTTGCCGCCATTCGCACACTTG
GCACTCCTGCGTGCTGAAGCGAAAGACACCACCTCAACACAACAATTTCTCGCCACGGTACGCAAACACATTCCAATCGA
CAATGCAGTCGAATGCTACGGCCCAATGTCGGCCCCCATGCCGCGTCGCGCCGGCTACGAGCGCTACCAATTATTGCTGT
CCAGCTCCCAACGTAACACACTACACCGCACACTCAATGTCTTGATACCAGCGATTCATGCACTGCCAGAAGCACGCCGA
GTCCGCTGGTCGTTAGACGTGGATCCAGTTGATCTTTACTAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-103)

Primosomal protein N C-terminal domain (PriA_C)

(636-729)

DEAD/DEAH box helicase (DEAD)

(204-362)

Helicase conserved C-terminal domain (Helicase_C)

(505-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

40.595

100

0.409