Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A6A10_RS00925 Genome accession   NZ_CP016604
Coordinates   194265..195221 (-) Length   318 a.a.
NCBI ID   WP_147404747.1    Uniprot ID   A0A420XGW3
Organism   Otariodibacter oris strain Baika1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189265..200221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A10_RS00900 (A6A10_00885) - 189788..190675 (+) 888 WP_154399688.1 hypothetical protein -
  A6A10_RS00905 (A6A10_00890) - 190758..191471 (+) 714 WP_121123125.1 hypothetical protein -
  A6A10_RS00910 (A6A10_00895) - 191628..192542 (-) 915 WP_121123127.1 siderophore ABC transporter substrate-binding protein -
  A6A10_RS00915 (A6A10_00900) - 192564..193322 (-) 759 WP_121123129.1 ABC transporter ATP-binding protein -
  A6A10_RS00920 (A6A10_00905) - 193319..194272 (-) 954 WP_121123131.1 iron chelate uptake ABC transporter family permease subunit -
  A6A10_RS00925 (A6A10_00910) ceuB 194265..195221 (-) 957 WP_147404747.1 ABC transporter permease Machinery gene
  A6A10_RS00930 (A6A10_00915) - 195249..196001 (-) 753 WP_170143763.1 alpha/beta hydrolase -
  A6A10_RS00935 (A6A10_00920) - 196070..198130 (-) 2061 WP_121123137.1 TonB-dependent receptor domain-containing protein -
  A6A10_RS00940 (A6A10_00925) rpsT 198354..198617 (-) 264 WP_121123139.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35155.75 Da        Isoelectric Point: 9.7562

>NTDB_id=189577 A6A10_RS00925 WP_147404747.1 194265..195221(-) (ceuB) [Otariodibacter oris strain Baika1]
MYSIITLFVLLVILSISSLFIGVSNVDIVSLFHFDPEQWNIVTLSRIPRLISLLIAGASLSVCGLIMQQISQNRFVSPTI
VGTMDSARLGILLSIILFPNVAILGKTVFATIVAFFGSLLFILILRHVKFKNMIFVPLVGIMMGNIISSITLFIAIKLDI
LQNLSGWLQGDFSLIMQGRYELLYLGLPILVIIYFFISRFAIVGMGKDIAKMLGLNYQGTLYFGLFIVSIITSIILVTIG
MIPFIGLIIPNLITLYYGDNLSKILPLTAILGALFIIVCDVFGRLIIYPYEVPINTTVGVLGSGIFLFILAKRYRNNA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=189577 A6A10_RS00925 WP_147404747.1 194265..195221(-) (ceuB) [Otariodibacter oris strain Baika1]
ATGTATTCAATAATTACGCTCTTTGTTTTATTAGTAATTCTTTCTATAAGCTCATTATTTATTGGTGTTTCTAATGTAGA
TATCGTGAGCTTATTCCATTTTGATCCTGAACAATGGAATATTGTTACCTTAAGTCGTATTCCCAGATTAATCAGCTTGC
TTATTGCTGGAGCCAGTTTAAGTGTATGCGGATTAATCATGCAACAAATTAGTCAAAATCGTTTCGTCTCACCGACTATT
GTTGGAACAATGGATAGTGCGAGATTAGGGATTTTACTCTCTATTATCTTATTTCCTAATGTTGCTATTTTAGGTAAAAC
TGTATTTGCCACTATTGTTGCTTTCTTTGGATCTTTACTTTTTATCTTAATATTACGCCATGTAAAATTTAAAAATATGA
TTTTTGTACCACTTGTTGGAATAATGATGGGTAATATTATTAGTTCCATTACCTTATTTATCGCAATTAAATTAGATATT
TTACAAAATTTATCAGGTTGGCTACAAGGCGACTTTTCATTAATTATGCAAGGACGCTATGAATTATTATATCTTGGCTT
ACCTATCTTGGTAATTATTTATTTCTTCATCTCTCGTTTTGCTATTGTAGGAATGGGAAAAGATATTGCGAAGATGTTAG
GGTTAAATTATCAAGGTACACTTTATTTTGGATTATTTATTGTTTCAATTATTACTTCTATAATTTTAGTCACTATCGGA
ATGATTCCTTTTATTGGGTTAATCATTCCTAATCTTATTACACTCTATTATGGTGATAATTTATCAAAGATATTACCACT
CACTGCTATTTTAGGTGCATTATTTATTATTGTTTGTGATGTTTTTGGACGATTAATCATTTACCCATATGAAGTACCTA
TTAATACAACAGTAGGGGTATTAGGTAGTGGTATATTTTTATTCATTTTAGCCAAAAGGTATCGGAATAATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420XGW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.733

97.799

0.516

Multiple sequence alignment