Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCD20_RS20010 Genome accession   NZ_CP020835
Coordinates   3815484..3815963 (+) Length   159 a.a.
NCBI ID   WP_023567996.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN051542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3810484..3820963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCD20_RS19980 (BCD20_19980) - 3811580..3812293 (+) 714 WP_023567990.1 WYL domain-containing protein -
  BCD20_RS26235 - 3812295..3812444 (+) 150 WP_001458941.1 hypothetical protein -
  BCD20_RS19985 (BCD20_19985) - 3812456..3812671 (+) 216 WP_023567991.1 hypothetical protein -
  BCD20_RS19990 (BCD20_19990) - 3812721..3813668 (+) 948 WP_023567992.1 Ivy family c-type lysozyme inhibitor -
  BCD20_RS19995 (BCD20_19995) - 3813756..3813989 (+) 234 WP_023567993.1 DUF905 domain-containing protein -
  BCD20_RS20000 (BCD20_20000) - 3814100..3814921 (+) 822 WP_023567994.1 DUF932 domain-containing protein -
  BCD20_RS20005 (BCD20_20005) - 3815002..3815472 (+) 471 WP_023567995.1 antirestriction protein -
  BCD20_RS20010 (BCD20_20010) radC 3815484..3815963 (+) 480 WP_023567996.1 DNA repair protein RadC Machinery gene
  BCD20_RS20015 (BCD20_20015) - 3815984..3816205 (+) 222 WP_023567997.1 DUF987 domain-containing protein -
  BCD20_RS20020 (BCD20_20020) - 3816229..3816588 (+) 360 WP_023567998.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BCD20_RS20025 (BCD20_20025) - 3816639..3817016 (+) 378 WP_023567999.1 TA system toxin CbtA family protein -
  BCD20_RS20030 (BCD20_20030) - 3817013..3817504 (+) 492 WP_023568000.1 DUF5983 family protein -
  BCD20_RS20035 (BCD20_20035) - 3817531..3817734 (+) 204 WP_023568001.1 DUF957 domain-containing protein -
  BCD20_RS20040 (BCD20_20040) - 3817816..3818661 (+) 846 Protein_3705 DUF4942 domain-containing protein -
  BCD20_RS20050 (BCD20_20050) proA 3818953..3820206 (-) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17887.30 Da        Isoelectric Point: 6.3295

>NTDB_id=189559 BCD20_RS20010 WP_023567996.1 3815484..3815963(+) (radC) [Escherichia coli strain CFSAN051542]
MEHQLPLFARELSPADQQTIREALTLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=189559 BCD20_RS20010 WP_023567996.1 3815484..3815963(+) (radC) [Escherichia coli strain CFSAN051542]
ATGGAACACCAGTTACCGTTGTTTGCCCGTGAATTATCCCCTGCCGACCAGCAAACCATCAGGGAGGCATTAACCCTGCT
GGAGTGCCAGCTACGTGAAACCGGCGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCTTGCTGGACCACCTGGTGGTCGGCGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377