Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BCD20_RS06280 Genome accession   NZ_CP020835
Coordinates   1209856..1210371 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain CFSAN051542     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204856..1215371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCD20_RS06235 (BCD20_06235) csrA 1205443..1205628 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BCD20_RS06265 (BCD20_06265) yqaB 1207086..1207652 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BCD20_RS06270 (BCD20_06270) yqaA 1207649..1208077 (+) 429 WP_085381327.1 YqaA family protein -
  BCD20_RS06275 (BCD20_06275) gshA 1208150..1209706 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  BCD20_RS06280 (BCD20_06280) luxS 1209856..1210371 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BCD20_RS06285 (BCD20_06285) emrB 1210435..1211973 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BCD20_RS06290 (BCD20_06290) emrA 1211990..1213162 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BCD20_RS06295 (BCD20_06295) emrR 1213289..1213819 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BCD20_RS06300 (BCD20_06300) ygaH 1213910..1214245 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  BCD20_RS06305 (BCD20_06305) ygaZ 1214235..1214972 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=189523 BCD20_RS06280 WP_001130211.1 1209856..1210371(+) (luxS) [Escherichia coli strain CFSAN051542]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=189523 BCD20_RS06280 WP_001130211.1 1209856..1210371(+) (luxS) [Escherichia coli strain CFSAN051542]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment