Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BCR17_RS02400 Genome accession   NZ_CP016598
Coordinates   506957..508747 (-) Length   596 a.a.
NCBI ID   WP_068850735.1    Uniprot ID   -
Organism   Leuconostoc lactis strain WiKim40     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 501957..513747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCR17_RS02375 (BCR17_02375) - 502871..503254 (-) 384 WP_029509908.1 VOC family protein -
  BCR17_RS02380 (BCR17_02380) - 503309..504325 (-) 1017 WP_029509909.1 zinc-dependent alcohol dehydrogenase family protein -
  BCR17_RS02385 (BCR17_02385) - 504506..505480 (+) 975 WP_068850726.1 LacI family DNA-binding transcriptional regulator -
  BCR17_RS02390 (BCR17_02390) - 505518..506441 (-) 924 WP_068850729.1 phosphoglycerate dehydrogenase -
  BCR17_RS02395 (BCR17_02395) - 506489..506887 (-) 399 WP_068850732.1 cytidine deaminase -
  BCR17_RS02400 (BCR17_02400) pepF 506957..508747 (-) 1791 WP_068850735.1 oligoendopeptidase F Regulator
  BCR17_RS02405 (BCR17_02405) - 508828..509856 (-) 1029 WP_068850738.1 competence protein CoiA -
  BCR17_RS02410 (BCR17_02410) - 509905..511344 (-) 1440 WP_029509914.1 ABC transporter substrate-binding protein/permease -
  BCR17_RS02415 (BCR17_02415) - 511448..512200 (-) 753 WP_010004224.1 amino acid ABC transporter ATP-binding protein -
  BCR17_RS02420 (BCR17_02420) - 512197..513645 (-) 1449 WP_029509915.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67326.79 Da        Isoelectric Point: 4.3121

>NTDB_id=189523 BCR17_RS02400 WP_068850735.1 506957..508747(-) (pepF) [Leuconostoc lactis strain WiKim40]
MAQLQRDEVPEELTWDLTSIFATDDDWETAYDAVQQGAQALQQFVGHVGDSAQTLQAALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEDTLANYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=189523 BCR17_RS02400 WP_068850735.1 506957..508747(-) (pepF) [Leuconostoc lactis strain WiKim40]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACTGATGACGATTG
GGAAACAGCCTATGATGCTGTCCAGCAAGGCGCACAAGCATTACAACAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAGCAGCACTGGAAGCCGATCTTGATTTAGAACGTCAATTAGAAAAAGTCTATGTCTATGCGCACCAAATTTAT
GATCAAGACACAACCAATCAAAAATATGCCGCTTTTAATAGTCGTGCGCAAGCGCTTTGGTCTGAAGTCAGTGAAGCGAC
AGCTTATTTCCAACCAGAAGTGTTGAATATTCCAGAAGACACGTTGGCGAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACTTTGCCAGCAGAACAGGAAGCACTGTTGGCCGGAGCA
GGGGATATTTTTAATGCGTCAGAAAACACTTTTGGTGCGTTAGATAACTCCGACATGACTTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTAACAAATGGTCTTTACAGCCTGTTGCTGGAATCTAAGTCACGTGAATTGCGCCAAGAAG
CGTTTGAAACCTTGTACGATAGTTACATTGCCTTGCAAAATACTTTTGCGTCAACGTTATCGTCACATGTCAAAGGGCAT
AACTATTTAGCGAAAGTGCGTCACTATCGCTCAGCACGGGAAGCAGCCATTCTGCCACATAGCCTACCCACATCAGTATT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTACCATTGTTGCATCGCTTTGTATCACTCCGTAAGCAAGTTTTGGGCG
TTGACGATGTGCACTCATACGACCTCTACGTACCGTTGGTCGATGAGATTGATTTTGATGTCACTTATGATAAAGCTAAA
GACATTGTGTTGGCCGCTTTGGCACCATTAGGACCAGACTACATTGCCGTGGTTAAAAAAGCTTTTGACGAACGCTGGAT
TGATGTGGTTGAAAATAAGGGCAAGCGTACTGGCGCTTATTCGAGTGGCACCTATGACACGAACCCCTTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTCTACACTTTGGCCCATGAAATGGGGCATTCAGTGCATTCTTATTTGACCCGCCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTGACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCTTATGTGTTGAATCAATATCTTGATGGCTTTAAGGGCACGG
TGTTCCGACAGACCCAATTTGCAGAATTTGAAGATTGGATTCATGAACAAAGTGCCGCCGGGGTGGCGTTAACAGCTGAC
GCGATGAGTACGTACTATGCGGCATTGAACCAGAAGTACTATGGGCCAGATCTCTTCCCTGATGAAGAAATCGCGTATGA
ATGGGCCCGCATTCCACATTTCTACTACAATTATTATGTCTATCAGTATGCCACTGGTGAAGCCGCAGCGACGACTTTGG
CTGATCGTATCTTGAACCAGAATGGGGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

99.161

0.532

Multiple sequence alignment