Detailed information NTG0189520

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCD20_RS06005
• Genome accession: NZ_CP020835
• Coordinates: 1157036..1158028 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN051542
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1152036..1163028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCD20_RS05975 (BCD20_05975)	ispD	1152097..1152807 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCD20_RS05980 (BCD20_05980)	ispF	1152807..1153286 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCD20_RS05985 (BCD20_05985)	truD	1153283..1154332 (+)	1050	WP_044863711.1	tRNA pseudouridine(13) synthase TruD	-
BCD20_RS05990 (BCD20_05990)	surE	1154313..1155074 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BCD20_RS05995 (BCD20_05995)	pcm	1155068..1155694 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BCD20_RS06000 (BCD20_06000)	nlpD	1155879..1156973 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BCD20_RS06005 (BCD20_06005)	rpoS	1157036..1158028 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BCD20_RS06010 (BCD20_06010)	ygbN	1158122..1159486 (-)	1365	WP_000104441.1	GntP family transporter	-
BCD20_RS06015 (BCD20_06015)	ygbM	1159575..1160351 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
BCD20_RS06020 (BCD20_06020)	ygbL	1160356..1160994 (-)	639	WP_001278994.1	aldolase	-
BCD20_RS06025 (BCD20_06025)	otnK	1160991..1162253 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=189520 BCD20_RS06005 WP_000081550.1 1157036..1158028(+) (rpoS) [Escherichia coli strain CFSAN051542]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=189520 BCD20_RS06005 WP_000081550.1 1157036..1158028(+) (rpoS) [Escherichia coli strain CFSAN051542]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715