Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCD20_RS00515 Genome accession   NZ_CP020835
Coordinates   95809..96477 (+) Length   222 a.a.
NCBI ID   WP_001295236.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN051542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 90809..101477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCD20_RS00480 (BCD20_00480) yicC 90828..91691 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  BCD20_RS00490 (BCD20_00490) rph 91818..92534 (+) 717 WP_001247089.1 ribonuclease PH -
  BCD20_RS00495 (BCD20_00495) pyrE 92600..93241 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BCD20_RS00500 (BCD20_00500) slmA 93278..93874 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BCD20_RS00505 (BCD20_00505) dut 93981..94439 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BCD20_RS00510 (BCD20_00510) coaBC 94417..95637 (-) 1221 WP_000050109.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BCD20_RS00515 (BCD20_00515) radC 95809..96477 (+) 669 WP_001295236.1 DNA repair protein RadC Machinery gene
  BCD20_RS00520 (BCD20_00520) rpmB 96694..96930 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BCD20_RS00525 (BCD20_00525) rpmG 96951..97118 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BCD20_RS00530 (BCD20_00530) mutM 97216..98025 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BCD20_RS00535 (BCD20_00535) coaD 98064..98543 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BCD20_RS00540 (BCD20_00540) waaA 98551..99828 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BCD20_RS00545 (BCD20_00545) rfaQ 100241..101299 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=189501 BCD20_RS00515 WP_001295236.1 95809..96477(+) (radC) [Escherichia coli strain CFSAN051542]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=189501 BCD20_RS00515 WP_001295236.1 95809..96477(+) (radC) [Escherichia coli strain CFSAN051542]
GTGAAAAATAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGCAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment