Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BCD20_RS00295 Genome accession   NZ_CP020835
Coordinates   49489..49962 (-) Length   157 a.a.
NCBI ID   WP_025376489.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN051542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44489..54962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCD20_RS26435 (BCD20_00255) rhuM 44751..44912 (-) 162 Protein_45 RhuM family protein -
  BCD20_RS00260 (BCD20_00260) - 45126..46163 (-) 1038 WP_045265419.1 virulence RhuM family protein -
  BCD20_RS00265 (BCD20_00265) - 46251..47084 (-) 834 WP_047399701.1 DUF4942 domain-containing protein -
  BCD20_RS00270 (BCD20_00270) - 47199..47540 (-) 342 WP_047399350.1 TA system toxin CbtA family protein -
  BCD20_RS00275 (BCD20_00275) - 47576..47920 (-) 345 WP_045265421.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BCD20_RS00280 (BCD20_00280) - 47944..48045 (-) 102 Protein_50 DUF987 family protein -
  BCD20_RS00285 (BCD20_00285) - 48102..49315 (+) 1214 WP_139371347.1 IS3 family transposase -
  BCD20_RS26440 (BCD20_00290) - 49359..49478 (-) 120 Protein_52 DUF987 family protein -
  BCD20_RS00295 (BCD20_00295) radC 49489..49962 (-) 474 WP_025376489.1 DNA repair protein RadC Machinery gene
  BCD20_RS00300 (BCD20_00300) - 50033..50854 (-) 822 WP_047399357.1 DUF932 domain-containing protein -
  BCD20_RS00305 (BCD20_00305) - 50923..51378 (-) 456 WP_047399359.1 hypothetical protein -
  BCD20_RS00315 (BCD20_00315) - 51610..52413 (-) 804 WP_085381269.1 hypothetical protein -
  BCD20_RS00320 (BCD20_00320) - 52433..52867 (-) 435 WP_085381270.1 hypothetical protein -
  BCD20_RS00325 (BCD20_00325) - 53180..54469 (-) 1290 WP_085381271.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17997.66 Da        Isoelectric Point: 7.2791

>NTDB_id=189499 BCD20_RS00295 WP_025376489.1 49489..49962(-) (radC) [Escherichia coli strain CFSAN051542]
MSELILPPAFPVNEQRIIRRAMRLLEKYHRQPGEQFLDTSCTKSWLQLHLGRQEREVFVVLYLDNQHRLLEHETLFLGTI
NHTEVHPREIVKSALRHNAAAVILAHNHPSGITDASKADRTITSRIVNALTLVDIRVLDHFIIGDGDALSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=189499 BCD20_RS00295 WP_025376489.1 49489..49962(-) (radC) [Escherichia coli strain CFSAN051542]
ATGTCTGAACTGATATTACCTCCGGCTTTTCCAGTCAATGAGCAACGTATTATCCGTCGCGCTATGCGACTGCTGGAGAA
ATACCACCGCCAGCCCGGCGAGCAGTTCCTTGACACGAGTTGTACGAAAAGCTGGCTGCAACTGCATCTGGGACGGCAGG
AACGTGAGGTTTTTGTCGTGCTCTATCTCGATAACCAGCATCGTCTGCTGGAACATGAAACGCTATTCCTTGGCACGATT
AACCACACCGAAGTTCATCCCCGTGAAATTGTGAAATCTGCACTACGCCACAACGCGGCAGCGGTGATCCTCGCTCATAA
CCATCCATCGGGAATAACGGATGCCAGTAAAGCAGACCGAACGATTACTTCCCGGATAGTGAATGCACTGACTCTGGTGG
ATATCCGGGTGCTGGATCATTTCATCATCGGTGATGGTGATGCGTTGTCGTTCGCGGAAAGAGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.5

76.433

0.439

Multiple sequence alignment