Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BCM43_RS22210 Genome accession   NZ_CP016588
Coordinates   4372446..4372769 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain KNU-07     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4367446..4377769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS22195 (BCM43_22195) - 4367960..4369327 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  BCM43_RS22200 (BCM43_22200) inhA1 4369499..4371889 (-) 2391 WP_001035946.1 M6 family metalloprotease immune inhibitor InhA1 -
  BCM43_RS22205 (BCM43_22205) - 4372232..4372366 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  BCM43_RS22210 (BCM43_22210) sinR 4372446..4372769 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  BCM43_RS22215 (BCM43_22215) calY 4372843..4373436 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  BCM43_RS22220 (BCM43_22220) - 4373824..4374702 (-) 879 WP_065704555.1 DUF4047 domain-containing protein -
  BCM43_RS22225 (BCM43_22225) - 4374837..4375424 (-) 588 WP_000172854.1 CalY family protein -
  BCM43_RS22230 (BCM43_22230) - 4375485..4376054 (-) 570 WP_000767792.1 signal peptidase I -
  BCM43_RS22235 (BCM43_22235) - 4376245..4377531 (-) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=189433 BCM43_RS22210 WP_000578885.1 4372446..4372769(+) (sinR) [Bacillus thuringiensis strain KNU-07]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=189433 BCM43_RS22210 WP_000578885.1 4372446..4372769(+) (sinR) [Bacillus thuringiensis strain KNU-07]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment