Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCM43_RS16920 Genome accession   NZ_CP016588
Coordinates   3344240..3344518 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain KNU-07     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3339240..3349518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS16895 (BCM43_16895) - 3339540..3340199 (-) 660 WP_000682538.1 CatB-related O-acetyltransferase -
  BCM43_RS16900 (BCM43_16900) - 3340453..3341211 (-) 759 WP_000347987.1 TSUP family transporter -
  BCM43_RS16905 (BCM43_16905) - 3341279..3342529 (-) 1251 WP_001032367.1 hypothetical protein -
  BCM43_RS31720 - 3342886..3344156 (+) 1271 Protein_3330 IS3 family transposase -
  BCM43_RS16920 (BCM43_16920) abrB 3344240..3344518 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCM43_RS16925 (BCM43_16925) - 3344659..3345536 (-) 878 Protein_3332 helix-turn-helix domain-containing protein -
  BCM43_RS16930 (BCM43_16930) - 3345913..3346164 (+) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  BCM43_RS16935 (BCM43_16935) - 3346405..3347007 (-) 603 WP_000517260.1 hypothetical protein -
  BCM43_RS16940 (BCM43_16940) - 3347033..3347842 (-) 810 WP_000678509.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=189428 BCM43_RS16920 WP_000842216.1 3344240..3344518(-) (abrB) [Bacillus thuringiensis strain KNU-07]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=189428 BCM43_RS16920 WP_000842216.1 3344240..3344518(-) (abrB) [Bacillus thuringiensis strain KNU-07]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATCGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment