Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BCM43_RS08920 Genome accession   NZ_CP016588
Coordinates   1696631..1697089 (-) Length   152 a.a.
NCBI ID   WP_000804862.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KNU-07     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691631..1702089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS08895 (BCM43_08895) - 1691783..1693324 (-) 1542 WP_000449902.1 MDR family MFS transporter -
  BCM43_RS08900 (BCM43_08900) - 1693738..1694238 (+) 501 WP_000708120.1 hypothetical protein -
  BCM43_RS08905 (BCM43_08905) - 1694270..1694503 (-) 234 WP_000939446.1 SPP1 phage holin family protein -
  BCM43_RS08910 (BCM43_08910) - 1694669..1695322 (+) 654 WP_000680811.1 diguanylate cyclase -
  BCM43_RS08915 (BCM43_08915) - 1695937..1696599 (+) 663 WP_000922482.1 YkyA family protein -
  BCM43_RS08920 (BCM43_08920) kre 1696631..1697089 (-) 459 WP_000804862.1 YkyB family protein Regulator
  BCM43_RS08925 (BCM43_08925) - 1697231..1698805 (+) 1575 WP_065703240.1 Ppx/GppA family phosphatase -
  BCM43_RS08930 (BCM43_08930) - 1698914..1701022 (+) 2109 WP_000421677.1 polyphosphate kinase -
  BCM43_RS08935 (BCM43_08935) - 1701183..1701419 (-) 237 WP_000283738.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=189422 BCM43_RS08920 WP_000804862.1 1696631..1697089(-) (kre) [Bacillus thuringiensis strain KNU-07]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTIQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=189422 BCM43_RS08920 WP_000804862.1 1696631..1697089(-) (kre) [Bacillus thuringiensis strain KNU-07]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTGGCAAAAAAAACAATTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment