Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BA953_RS24690 Genome accession   NZ_CP016557
Coordinates   1929346..1930443 (+) Length   365 a.a.
NCBI ID   WP_019275431.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924346..1935443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS24660 (BA953_24660) - 1925730..1925981 (-) 252 WP_029236068.1 YgjV family protein -
  BA953_RS24665 (BA953_24665) - 1926277..1926597 (-) 321 WP_006961083.1 DUF496 family protein -
  BA953_RS24670 (BA953_24670) - 1926791..1926985 (+) 195 WP_064486358.1 hypothetical protein -
  BA953_RS24675 (BA953_24675) - 1927015..1927674 (+) 660 WP_040121669.1 YceH family protein -
  BA953_RS24680 (BA953_24680) - 1927674..1927991 (+) 318 WP_065742910.1 GIY-YIG nuclease family protein -
  BA953_RS24685 (BA953_24685) traF 1928058..1929197 (+) 1140 WP_065742976.1 conjugal transfer protein TraF -
  BA953_RS24690 (BA953_24690) luxP 1929346..1930443 (+) 1098 WP_019275431.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BA953_RS24695 (BA953_24695) luxQ 1930443..1933013 (+) 2571 WP_065742911.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41247.46 Da        Isoelectric Point: 5.6651

>NTDB_id=189177 BA953_RS24690 WP_019275431.1 1929346..1930443(+) (luxP) [Vibrio coralliilyticus strain 58]
MFKATLLSLAVAVSATSQAHTTQVLNGYWQYDEYLDSHPVQKQLTDALSETVRNYPTPISAKQDKPVSIAVVYPGQQISD
YWVRNIKAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARILEQYYKDTIPKESRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSYYTTAT
RESGFNAAVKAIEKDPSISFIYACSTDVALGAVEALKSMKREDILINGWGGGSAELEAISKGDLDVTAMRMNDDTGIAMA
EAIKWDLEGKDVPHVYSGDFEIVTKADSPSKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=189177 BA953_RS24690 WP_019275431.1 1929346..1930443(+) (luxP) [Vibrio coralliilyticus strain 58]
ATGTTTAAAGCAACGCTGTTATCATTGGCGGTCGCTGTATCAGCGACAAGTCAGGCACACACTACACAAGTCCTCAATGG
TTACTGGCAATACGACGAATATCTCGATTCCCATCCCGTACAGAAGCAGTTAACGGATGCGTTGTCTGAAACAGTAAGAA
ATTACCCAACTCCAATTTCGGCGAAGCAAGATAAGCCAGTTTCTATTGCTGTGGTTTATCCTGGGCAGCAGATTTCGGAC
TATTGGGTTCGAAATATCAAAGCTTTTGAAACTCGTTTAGAAAAGTTAGGAATCAGCTACAAGATAAACCAAGTTTTTAC
TCGTCCGAATCTCGATGTCAGACAACAGAGTCTTTCGTTGCTTGAAGCGGTTCAAAATAAAGCTGACTACTTGATATTCA
CGCTCGACACGACTCGTCACCGCAAATTTATTGAACATGTTTTGAGTTCAACCGATACCAAGCTCATTCTGCAAAATATT
ACGACCCCTGTTAGAGCTTGGGACGATCAGCAACCCTTCATGTATGTGGGGTTTGATCACATCAAAGGTGCTCGAATTCT
TGAGCAGTACTACAAAGACACCATCCCTAAAGAAAGCCGTTACTCGGTGCTTTACTTTTCTGAAGGTTACGTGAGTGATG
CTCGTGGTGACACGTTTATTGAAGAGATGAGTCATCATGATTCGTACAAGCTATCTTCATCGTATTACACCACAGCAACT
CGAGAATCTGGGTTTAATGCTGCCGTTAAAGCGATAGAGAAAGATCCTAGTATCTCCTTCATATATGCGTGTTCTACAGA
TGTTGCCTTAGGAGCAGTAGAAGCACTTAAATCGATGAAGAGAGAAGATATTCTTATTAATGGTTGGGGTGGTGGTAGCG
CCGAGTTAGAGGCTATTTCTAAAGGCGATCTAGATGTTACAGCCATGAGAATGAATGATGACACTGGTATTGCTATGGCA
GAAGCTATTAAGTGGGATCTTGAAGGTAAAGATGTACCGCACGTCTACTCTGGTGACTTTGAAATAGTGACCAAGGCGGA
CAGTCCTTCAAAAGTTGAGAAATTAAAGCAGAGAGCGTTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.722

98.63

0.638

Multiple sequence alignment