Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | BA953_RS11350 | Genome accession | NZ_CP016556 |
| Coordinates | 2456230..2457213 (+) | Length | 327 a.a. |
| NCBI ID | WP_006958149.1 | Uniprot ID | A0A097AVA5 |
| Organism | Vibrio coralliilyticus strain 58 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2451230..2462213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA953_RS11315 (BA953_11315) | ftsB | 2451304..2451582 (+) | 279 | WP_019277512.1 | cell division protein FtsB | - |
| BA953_RS11320 (BA953_11320) | ispD | 2451585..2452289 (+) | 705 | WP_043009251.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| BA953_RS11325 (BA953_11325) | ispF | 2452293..2452772 (+) | 480 | WP_019277514.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| BA953_RS11330 (BA953_11330) | truD | 2452819..2453865 (+) | 1047 | WP_065741163.1 | tRNA pseudouridine(13) synthase TruD | - |
| BA953_RS11335 (BA953_11335) | surE | 2453877..2454620 (+) | 744 | WP_196769805.1 | 5'/3'-nucleotidase SurE | - |
| BA953_RS11340 (BA953_11340) | - | 2454623..2455249 (+) | 627 | WP_065741165.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| BA953_RS11345 (BA953_11345) | nlpD | 2455252..2456163 (+) | 912 | WP_065741166.1 | murein hydrolase activator NlpD | - |
| BA953_RS11350 (BA953_11350) | rpoS | 2456230..2457213 (+) | 984 | WP_006958149.1 | RNA polymerase sigma factor RpoS | Regulator |
| BA953_RS11355 (BA953_11355) | - | 2457281..2458555 (-) | 1275 | WP_006958148.1 | CNNM domain-containing protein | - |
| BA953_RS11360 (BA953_11360) | - | 2458678..2459472 (-) | 795 | WP_038164050.1 | inner membrane protein YpjD | - |
| BA953_RS11365 (BA953_11365) | ffh | 2459678..2461069 (+) | 1392 | WP_021458280.1 | signal recognition particle protein | - |
| BA953_RS11370 (BA953_11370) | rpsP | 2461278..2461526 (+) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
| BA953_RS11375 (BA953_11375) | rimM | 2461556..2462104 (+) | 549 | WP_029236289.1 | ribosome maturation factor RimM | - |
Sequence
Protein
Download Length: 327 a.a. Molecular weight: 37396.39 Da Isoelectric Point: 4.7232
>NTDB_id=189165 BA953_RS11350 WP_006958149.1 2456230..2457213(+) (rpoS) [Vibrio coralliilyticus strain 58]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
Nucleotide
Download Length: 984 bp
>NTDB_id=189165 BA953_RS11350 WP_006958149.1 2456230..2457213(+) (rpoS) [Vibrio coralliilyticus strain 58]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAGGAACTGAATATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACGGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGCATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTAGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
TTTAGCACGTCGTTTTGGATTGCTGGGTTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTAA
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAGGAACTGAATATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACGGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGCATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTAGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
TTTAGCACGTCGTTTTGGATTGCTGGGTTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
83.988 |
100 |
0.85 |