Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BA953_RS06950 Genome accession   NZ_CP016556
Coordinates   1565157..1565675 (-) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio coralliilyticus strain 58     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560157..1570675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS06930 (BA953_06930) - 1562316..1563572 (-) 1257 WP_065740759.1 HD-GYP domain-containing protein -
  BA953_RS06935 (BA953_06935) - 1563691..1564098 (-) 408 WP_006957092.1 VOC family protein -
  BA953_RS06945 (BA953_06945) - 1564635..1565111 (+) 477 WP_065740760.1 RDD family protein -
  BA953_RS06950 (BA953_06950) luxS 1565157..1565675 (-) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  BA953_RS06955 (BA953_06955) - 1565700..1566269 (-) 570 WP_065740761.1 hypothetical protein -
  BA953_RS06960 (BA953_06960) gshA 1566306..1567874 (-) 1569 WP_065741731.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=189147 BA953_RS06950 WP_006957088.1 1565157..1565675(-) (luxS) [Vibrio coralliilyticus strain 58]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=189147 BA953_RS06950 WP_006957088.1 1565157..1565675(-) (luxS) [Vibrio coralliilyticus strain 58]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACACGTATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGCGATACCATTACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATTCTTTCTGAGAAAGGCATTC
ACACACTGGAGCACTTGTACGCAGGCTTCATGCGCAGTCACTTAAATGGTGATAGCGTAGAAATTATCGATATTTCGCCA
ATGGGTTGCCGTACTGGCTTTTACATGAGCCTGATTGGTACACCAACAGAAGAGCAGGTCGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAATTAAACGAATATCAATGTGGCACTGCTGCGATGC
ACTCTCTTGAGGAAGCTAAACAGATTGCTCAAGCTATCATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTAAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment