Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   BBH51_RS08915 Genome accession   NZ_CP016553
Coordinates   1839830..1840351 (-) Length   173 a.a.
NCBI ID   WP_005562086.1    Uniprot ID   A0AAC8Y0V5
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834830..1845351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS08900 (BBH51_08900) comQ 1838131..1838433 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  BBH51_RS08905 (BBH51_08905) - 1838408..1839103 (-) 696 WP_005537951.1 DUF2572 family protein -
  BBH51_RS08910 (BBH51_08910) - 1839100..1839843 (-) 744 WP_005549806.1 PulJ/GspJ family protein -
  BBH51_RS08915 (BBH51_08915) comN 1839830..1840351 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BBH51_RS08935 (BBH51_08935) pal 1841056..1841523 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  BBH51_RS08940 (BBH51_08940) tolB 1841538..1842818 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  BBH51_RS08945 (BBH51_08945) tolA 1842853..1844001 (-) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  BBH51_RS08950 (BBH51_08950) tolR 1844018..1844440 (-) 423 WP_005542289.1 colicin uptake protein TolR -
  BBH51_RS08955 (BBH51_08955) tolQ 1844526..1845215 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19865.08 Da        Isoelectric Point: 8.7359

>NTDB_id=189138 BBH51_RS08915 WP_005562086.1 1839830..1840351(-) (comN) [Aggregatibacter actinomycetemcomitans strain IDH781]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVFAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTTSTTCFVLQANQQRTLFSFFNVGSLKLK
GNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=189138 BBH51_RS08915 WP_005562086.1 1839830..1840351(-) (comN) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGCAAAAAGGATTCACTTTGCTGGAAATGTTAATTGCATTATTTATTATCAGCCTGTTGCTGACGCTTGCTTTACCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACGGCGCAA
ATTAAAAATAGCCATTTGTGTGACTGTTTAAATCCTGTTGCTTGCCCGCAAAATGTTTTCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACCGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGACTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAA
GGTAATCAATCTTTGAGTGCTTGCGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment