Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   BBH51_RS08900 Genome accession   NZ_CP016553
Coordinates   1838131..1838433 (-) Length   100 a.a.
NCBI ID   WP_005554585.1    Uniprot ID   A0A142G259
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1833131..1843433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS08885 (BBH51_08885) - 1833804..1834241 (+) 438 WP_005549811.1 DNA polymerase III subunit psi -
  BBH51_RS08890 (BBH51_08890) rimI 1834251..1834694 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  BBH51_RS08895 (BBH51_08895) recC 1834696..1838085 (-) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  BBH51_RS08900 (BBH51_08900) comQ 1838131..1838433 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  BBH51_RS08905 (BBH51_08905) - 1838408..1839103 (-) 696 WP_005537951.1 DUF2572 family protein -
  BBH51_RS08910 (BBH51_08910) - 1839100..1839843 (-) 744 WP_005549806.1 PulJ/GspJ family protein -
  BBH51_RS08915 (BBH51_08915) comN 1839830..1840351 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BBH51_RS08935 (BBH51_08935) pal 1841056..1841523 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  BBH51_RS08940 (BBH51_08940) tolB 1841538..1842818 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11675.61 Da        Isoelectric Point: 10.6243

>NTDB_id=189137 BBH51_RS08900 WP_005554585.1 1838131..1838433(-) (comQ) [Aggregatibacter actinomycetemcomitans strain IDH781]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=189137 BBH51_RS08900 WP_005554585.1 1838131..1838433(-) (comQ) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGTGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G259

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55

Multiple sequence alignment