Detailed information NTG0189101

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B7W87_RS07570
• Genome accession: NZ_CP020704
• Coordinates: 1543909..1544913 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PASGNDM699
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1538909..1549913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7W87_RS07540 (B7W87_07540)	fghA	1539001..1539852 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
B7W87_RS07545 (B7W87_07545)	ispF	1539923..1540396 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B7W87_RS07550 (B7W87_07550)	truD	1540393..1541460 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
B7W87_RS07555 (B7W87_07555)	surE	1541448..1542197 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
B7W87_RS07560 (B7W87_07560)	-	1542230..1542865 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
B7W87_RS07565 (B7W87_07565)	-	1542911..1543804 (+)	894	WP_003129949.1	peptidoglycan DD-metalloendopeptidase family protein	-
B7W87_RS07570 (B7W87_07570)	rpoS	1543909..1544913 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
B7W87_RS07575 (B7W87_07575)	fdxA	1545339..1545662 (-)	324	WP_003092272.1	ferredoxin FdxA	-
B7W87_RS07580 (B7W87_07580)	mutS	1545729..1548296 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
B7W87_RS07590 (B7W87_07590)	-	1548422..1549429 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=189101 B7W87_RS07570 WP_003113871.1 1543909..1544913(+) (rpoS) [Pseudomonas aeruginosa strain PASGNDM699]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=189101 B7W87_RS07570 WP_003113871.1 1543909..1544913(+) (rpoS) [Pseudomonas aeruginosa strain PASGNDM699]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653