Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BCM40_RS07475 Genome accession   NZ_CP016543
Coordinates   1490865..1492562 (+) Length   565 a.a.
NCBI ID   WP_065526485.1    Uniprot ID   A0A1C7EI97
Organism   Planococcus donghaensis strain DSM 22276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485865..1497562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM40_RS07450 (BCM40_08770) xseB 1486278..1486514 (+) 237 WP_008429975.1 exodeoxyribonuclease VII small subunit -
  BCM40_RS07455 (BCM40_08765) - 1486511..1487392 (+) 882 WP_065526487.1 polyprenyl synthetase family protein -
  BCM40_RS07460 (BCM40_08760) dxs 1487478..1489388 (+) 1911 WP_420330055.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BCM40_RS07465 (BCM40_08755) - 1489385..1490206 (+) 822 WP_065526486.1 TlyA family RNA methyltransferase -
  BCM40_RS07470 (BCM40_08750) ahrC 1490398..1490847 (+) 450 WP_008429983.1 transcriptional regulator AhrC/ArgR -
  BCM40_RS07475 (BCM40_08745) recN 1490865..1492562 (+) 1698 WP_065526485.1 DNA repair protein RecN Machinery gene
  BCM40_RS07480 (BCM40_08740) spo0A 1492620..1493399 (+) 780 WP_065526484.1 sporulation transcription factor Spo0A -
  BCM40_RS16600 - 1493653..1493784 (+) 132 WP_272941508.1 hypothetical protein -
  BCM40_RS07485 (BCM40_08735) - 1494054..1494788 (+) 735 WP_065526483.1 glycerophosphodiester phosphodiesterase -
  BCM40_RS07490 (BCM40_08730) - 1495244..1495477 (-) 234 WP_008499061.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63471.32 Da        Isoelectric Point: 5.0438

>NTDB_id=189069 BCM40_RS07475 WP_065526485.1 1490865..1492562(+) (recN) [Planococcus donghaensis strain DSM 22276]
MLRELDIRNFAIIDALTVSFAEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLENEQHPVFRK
LEEFGITKSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQFAGKSLAKSK
ESYSHTFDKYMKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEELVLERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSELEHAAAVDETFTGSSETLSSAFYLIQDTGSEIKRILDDMEFDPGRLNEIEQRLAVIQSLKRKYGSS
VEDILLYHEKQTDELDKLVNRDQRFQLDQEKLKEMTEDLRIEAEELTILRKKAAKSLGKAIMEQLKELHMAKASFEVNFD
VLPNSRFDRNGHDAITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELDGSERTEEMSRMLSGAEITDLTLQHAKELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=189069 BCM40_RS07475 WP_065526485.1 1490865..1492562(+) (recN) [Planococcus donghaensis strain DSM 22276]
ATGCTTCGGGAATTAGATATACGCAATTTTGCCATTATAGATGCCTTAACCGTAAGCTTTGCTGAAGGGTTAACGGTATT
GACAGGGGAAACCGGTGCAGGTAAATCCATTATCATCGATGCCGTCCATCTTTTAGCAGGTGGACGGGGGAGCCAAGAGT
TTATTCGACATGGTGCTAAAAAAGCTGAAATCGAAGGTTTATTCTCTTTGGAAAATGAGCAGCATCCGGTATTTCGCAAA
TTAGAAGAATTCGGCATCACAAAGAGTGATGGCGATATTTTGTTGCGTAGAGAATTAAACGACAAAGGCAAAAATGTTTG
TCGGATTAATGGTAAACTAGTGACAATATCGATTTTGCGTGAAGTGGGTGCATCATTAATAGACATTCACGGACAACACG
AAACGCAAGAGTTAATGGATGAAAAACAGCATTTATACTTATTGGATCAATTTGCTGGTAAATCTTTAGCAAAGTCGAAA
GAAAGCTATAGCCACACATTTGATAAATACATGAAATTAAAGCGTGAGTTTTCGTCCTATACAGAAAATGAGCAGCAAAT
TGCCCAACGGATTGATTTATTAACATTTCAATTGCAAGAAATTGAAGCAGCAGAATTGGTTATCGGAGAAGAAGAAGAGC
TCGTGCTAGAACGTAAAAAATTGCAAAATTTCAACAAAATTTACGAATCCATTTCAGCGGCTCATGAAGCCATTCAAGGC
GAGAGTAAAGGATTAGACTGGATAGGTTCTGCAATGTCTGAATTAGAGCATGCAGCGGCTGTAGATGAAACATTTACGGG
ATCTTCAGAGACATTGTCTAGCGCTTTTTACTTGATCCAAGACACAGGTAGTGAAATTAAACGTATTTTAGATGACATGG
AGTTTGATCCTGGCCGATTAAATGAAATTGAACAGCGTTTAGCCGTTATCCAATCGTTGAAAAGAAAATATGGGTCTTCC
GTTGAGGACATTTTGCTGTATCATGAAAAGCAGACAGATGAGTTGGATAAATTAGTTAACCGCGATCAACGTTTTCAGTT
AGATCAAGAAAAATTAAAAGAAATGACTGAAGATCTACGTATTGAAGCGGAAGAATTGACGATTTTGCGCAAAAAAGCTG
CTAAAAGTTTAGGGAAAGCGATTATGGAGCAGTTAAAAGAGCTTCATATGGCTAAAGCATCATTTGAAGTGAATTTTGAT
GTATTGCCGAATTCCAGATTTGATCGAAATGGACATGATGCAATAACGTTCTATATTTCAACAAACCTGGGTGAACCATT
GAAACCCCTAACAAAAGTGGCATCAGGTGGAGAATTGTCACGTATGATGTTGGCCTTAAAAACGATATTTTCAAAACATC
AAGGAATTACGTCGATTATTTTTGATGAAGTGGATACAGGCGTGAGTGGTCGTGTAGCTCAAGCCATTGCAGAAAAAATT
GCAGCTATCTCAGTGGATTCTCAAGTATTGTGTATTTCCCATTTGCCTCAAGTAGCGGCAATGGCTGATCAACATTTGTT
TATTGAAAAGAAAGTTGACAAACAACGGACAACTACCGCTGTAACCGAGCTTGATGGTAGCGAGCGAACAGAAGAAATGA
GTCGCATGCTATCGGGTGCTGAAATTACTGACTTGACTTTACAGCATGCCAAAGAATTACTTTCTTTAGCAGCAGATCGT
AAATTATTGATGAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7EI97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.632

100

0.531

Multiple sequence alignment