Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   B7W86_RS30145 Genome accession   NZ_CP020703
Coordinates   6268322..6268918 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PASGNDM345     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6263322..6273918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7W86_RS30125 (B7W86_30125) aroK 6264453..6264971 (-) 519 WP_003095833.1 shikimate kinase AroK -
  B7W86_RS30130 (B7W86_30130) pilQ 6264983..6267127 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  B7W86_RS30135 (B7W86_30135) comL/pilP 6267181..6267705 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  B7W86_RS30140 (B7W86_30140) pilO 6267702..6268325 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7W86_RS30145 (B7W86_30145) pilN 6268322..6268918 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  B7W86_RS30150 (B7W86_30150) pilM 6268918..6269982 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  B7W86_RS30155 (B7W86_30155) - 6270167..6272638 (+) 2472 WP_003135771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=189063 B7W86_RS30145 WP_003095839.1 6268322..6268918(-) (pilN) [Pseudomonas aeruginosa strain PASGNDM345]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=189063 B7W86_RS30145 WP_003095839.1 6268322..6268918(-) (pilN) [Pseudomonas aeruginosa strain PASGNDM345]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTAGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369