Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BCM40_RS02285 Genome accession   NZ_CP016543
Coordinates   435930..436880 (+) Length   316 a.a.
NCBI ID   WP_065527332.1    Uniprot ID   A0A1C7EKI1
Organism   Planococcus donghaensis strain DSM 22276     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430930..441880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM40_RS02265 (BCM40_13965) hflX 431041..432312 (+) 1272 WP_065527336.1 GTPase HflX -
  BCM40_RS02270 (BCM40_13960) - 432353..434071 (-) 1719 WP_065527335.1 ABC transporter ATP-binding protein -
  BCM40_RS02275 (BCM40_13955) - 434245..435108 (+) 864 WP_065527334.1 DUF6612 family protein -
  BCM40_RS02285 (BCM40_13945) ceuB 435930..436880 (+) 951 WP_065527332.1 ABC transporter permease Machinery gene
  BCM40_RS02290 (BCM40_13940) - 436873..437823 (+) 951 WP_065527331.1 iron chelate uptake ABC transporter family permease subunit -
  BCM40_RS02295 (BCM40_13935) - 437820..438581 (+) 762 WP_008432297.1 ABC transporter ATP-binding protein -
  BCM40_RS02300 (BCM40_13930) - 438602..439552 (+) 951 WP_065527330.1 siderophore ABC transporter substrate-binding protein -
  BCM40_RS02305 (BCM40_13925) - 439607..440902 (-) 1296 WP_065527329.1 ammonium transporter -
  BCM40_RS02310 (BCM40_13920) - 440915..441256 (-) 342 WP_065527328.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34872.08 Da        Isoelectric Point: 10.0983

>NTDB_id=189061 BCM40_RS02285 WP_065527332.1 435930..436880(+) (ceuB) [Planococcus donghaensis strain DSM 22276]
MKKRYLIPTLIILSIISLFVGVSSISIVDLFDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFVIAYLYANRFTVAGMGEDFSKNLGMKYRSVVNIGLTLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=189061 BCM40_RS02285 WP_065527332.1 435930..436880(+) (ceuB) [Planococcus donghaensis strain DSM 22276]
ATGAAAAAACGCTATTTAATACCAACATTAATCATACTGTCGATCATTTCCTTGTTTGTCGGAGTGAGTAGTATCAGCAT
AGTTGATTTGTTTGACTTCCAATCGGAAGAGACACAAATATTCTTAATCAGTCGTCTGCCGCGGCTGGTTGCGATTTTAC
TAGCAGGTGCAGGAATGAGTATGGCAGGACTCATTATGCAGCAGTTAAGTCGCAATAAATTCGTGTCTCCAACAACAGCA
GGTACATTAGATGCTACTCGGCTTGGGATTCTCGTATCCATGCTTTTGTTCGCGAATGCATCGATGCTAGAAAAAATGAC
AGTAGCTTTTGCTTTTGCACTTGCTGGGACATTTCTTTTTATGCAAATTCTTAACCGCATCAAATTTAAAGATGCGATAT
TTATTCCTTTAGTTGGGTTGATGTTTGGGAATATCTTGTCGTCCATTACAACATTTTTCGCTTATCGAGCAGATGTTATT
CAAAACATGTCTGCTTGGTTACAAGGTGACTTTTCCATGGTTATGAAAGGAAGTTATGAACTTCTTTACATCAGTGTTCC
GGTATTTGTTATCGCCTATCTCTACGCGAATCGATTTACGGTAGCGGGTATGGGGGAAGACTTCTCAAAGAATTTGGGGA
TGAAGTACCGCAGTGTTGTAAACATCGGATTGACACTCGTAGCTTTGATTACGGCGACAGTTGTTTTGACGGTAGGGGTT
ATCCCGTTTCTTGGGTTGATCATCCCAAATATCGTCTCAATTTTCAAAGGAGATCATCTTCAAAAAACATTGCCGCATAC
CGCGATGCTTGGCGCGATTTTCTTATTAGTGTGCGATATTTTAGGAAGAGTGCTGATTTACCCGTACGAAATTTCCATCA
GTTTGATGGTAGGCGTGATCGGCAGCTTTATTTTCCTCTTCTTGTTGTTTAGGAGGAAAGCATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7EKI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

99.051

0.532

Multiple sequence alignment