Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BCM40_RS00585 Genome accession   NZ_CP016543
Coordinates   123720..125096 (+) Length   458 a.a.
NCBI ID   WP_065527586.1    Uniprot ID   A0A1C7EMW2
Organism   Planococcus donghaensis strain DSM 22276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118720..130096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM40_RS00565 (BCM40_15665) - 119102..119572 (+) 471 WP_008432439.1 CtsR family transcriptional regulator -
  BCM40_RS00570 (BCM40_15660) - 119585..120118 (+) 534 WP_065527589.1 UvrB/UvrC motif-containing protein -
  BCM40_RS00575 (BCM40_15655) - 120108..121199 (+) 1092 WP_065527588.1 protein arginine kinase -
  BCM40_RS00580 (BCM40_15650) - 121196..123658 (+) 2463 WP_065527587.1 ATP-dependent Clp protease ATP-binding subunit -
  BCM40_RS00585 (BCM40_15645) radA 123720..125096 (+) 1377 WP_065527586.1 DNA repair protein RadA Machinery gene
  BCM40_RS00590 (BCM40_15640) - 125189..126268 (+) 1080 WP_065527585.1 PIN/TRAM domain-containing protein -
  BCM40_RS00595 (BCM40_15635) ispD 126299..126994 (+) 696 WP_065527584.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BCM40_RS00600 (BCM40_15630) ispF 126991..127491 (+) 501 WP_008432451.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BCM40_RS00605 (BCM40_15625) gltX 127534..128997 (+) 1464 WP_065527583.1 glutamate--tRNA ligase -
  BCM40_RS00610 (BCM40_15620) epsC 129310..129972 (+) 663 WP_065527582.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49938.31 Da        Isoelectric Point: 6.4242

>NTDB_id=189059 BCM40_RS00585 WP_065527586.1 123720..125096(+) (radA) [Planococcus donghaensis strain DSM 22276]
MAKKKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVQAPKGTRGSFQHSASVPQKATPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANGGNRVLYISGEESIRQTKLRAERLDATSSELFIYAETNLELIH
HTIEDVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=189059 BCM40_RS00585 WP_065527586.1 123720..125096(+) (radA) [Planococcus donghaensis strain DSM 22276]
ATGGCTAAGAAAAAGACGAAATTTATTTGTCAGTCGTGTGGCTATGAATCAGCCAGGTGGATGGGGAAATGTCCAGGATG
CGCATCATGGAATACGATGACAGAAGAAGTAGAAGTCCAAGCTCCTAAAGGCACACGCGGTTCTTTTCAACATAGTGCAT
CTGTTCCGCAAAAAGCGACGCCTATCAATGCGATTGAAACACAAGACGAACCACGAGTAGAAACGGAACTAAGCGAACTA
AACCGTGTACTTGGTGGAGGCATTGTGCCAGGGTCATTAGTGCTTATTGGTGGGGACCCGGGTATCGGAAAATCAACTTT
GTTATTGCAAGTATCAGCGATGCTTGCAAACGGTGGAAACCGGGTATTATATATTTCCGGAGAAGAATCAATTCGCCAAA
CTAAATTGCGTGCAGAACGTTTAGATGCAACTTCTTCAGAGTTGTTCATTTATGCTGAAACAAACCTTGAATTGATTCAC
CATACCATTGAAGATGTAGCACCTGATTTTGTTATCGTTGATTCAATTCAGACCGTTCATCACCCTGAAGTCACGTCTGC
ACCAGGTAGTGTGACCCAAGTAAGAGAAAGTACGGCAGAATTGATGCGAATCGCTAAAACAAAAAACATTGCGATTTTCC
TTGTTGGGCATGTAACCAAAGAAGGTCAAATTGCAGGACCACGTATTTTGGAGCATATGGTAGATACGGTATTGTATTTT
GAAGGCGAACGCCATCACACGTACCGCATTTTACGTAGTGTTAAAAATCGTTTTGGTTCTACGAATGAAATCGCGATTTT
TGAAATGCTTCAAAGTGGATTAAAAGAAGTACTGAATCCATCAGAGTTATTTTTACAAGAGCGTTCGAGTGGTTCGGCTG
GTTCAACCGTTGTCGCTTCAATGGAAGGAACAAGGCCCATCTTGGTGGAAATCCAAGCATTAGTCACGCCTTCCAGCTTT
AATTACCCGAAGCGGATGGCGACGGGAATTGATGTCAATCGGGTCACCTTATTGATGGCGGTGCTTGAAAAGCGTGTAGG
TATGCTTTTGCAAGCTCAAGACGCGTATATTAAAGTTGCAGGAGGTGTAAAACTCGACGAACCAGCGATTGATTTGGCTG
TGTTAGCAAGTATTGTATCGAGTTTCCGTGATAAAGCACCAAATGTGTATGATTGTATAATCGGCGAAGTCGGGTTGACC
GGTGAAGTGAGACGTGTATCACGTATTGAGCAACGCGTTCAAGAGGCAGCAAAACTAGGATTTAAGCGTGCCATTATTCC
AGCGTCTAATTTAGGTGGCTGGGATTATCCGGAAGGAATTCGCGTAGTGGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AGATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7EMW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.406

98.908

0.716
  radA Streptococcus pneumoniae Rx1

61.623

99.563

0.614
  radA Streptococcus pneumoniae D39

61.623

99.563

0.614
  radA Streptococcus pneumoniae R6

61.623

99.563

0.614
  radA Streptococcus pneumoniae TIGR4

61.623

99.563

0.614
  radA Streptococcus mitis NCTC 12261

61.623

99.563

0.614
  radA Streptococcus mitis SK321

61.623

99.563

0.614

Multiple sequence alignment