Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I858_RS02235 Genome accession   NZ_CP016540
Coordinates   420765..421715 (+) Length   316 a.a.
NCBI ID   WP_049693958.1    Uniprot ID   A0A1B1RZZ1
Organism   Planococcus versutus strain L10.15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415765..426715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS02220 (I858_005610) hflX 416374..417645 (+) 1272 WP_049693961.1 GTPase HflX -
  I858_RS02225 (I858_005605) - 417698..419416 (-) 1719 WP_049693960.1 ABC transporter ATP-binding protein -
  I858_RS02230 (I858_005600) - 419609..420472 (+) 864 WP_049693959.1 DUF6612 family protein -
  I858_RS02235 (I858_005595) ceuB 420765..421715 (+) 951 WP_049693958.1 ABC transporter permease Machinery gene
  I858_RS02240 (I858_005590) - 421708..422658 (+) 951 WP_049693957.1 iron chelate uptake ABC transporter family permease subunit -
  I858_RS02245 (I858_005585) - 422655..423416 (+) 762 WP_049693956.1 ABC transporter ATP-binding protein -
  I858_RS02250 (I858_005580) - 423439..424398 (+) 960 WP_049693955.1 siderophore ABC transporter substrate-binding protein -
  I858_RS02255 (I858_005575) - 424645..425289 (+) 645 WP_049693954.1 uracil-DNA glycosylase -
  I858_RS02260 (I858_005570) - 425467..426405 (+) 939 WP_071645340.1 DUF4003 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34810.01 Da        Isoelectric Point: 10.0983

>NTDB_id=189020 I858_RS02235 WP_049693958.1 420765..421715(+) (ceuB) [Planococcus versutus strain L10.15]
MKKRYLIPTLIILSIISLFVGVSSISIADLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYLYANRFTVAGMGEDFSKNLGMKYRSVVNIGLTLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFVFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=189020 I858_RS02235 WP_049693958.1 420765..421715(+) (ceuB) [Planococcus versutus strain L10.15]
GTGAAGAAGCGTTACTTAATACCAACATTAATCATACTGTCAATCATTTCCTTGTTTGTCGGAGTAAGCAGTATCAGTAT
AGCTGATTTGCTTGATTTTCAATCGGAAGAGACACAGATATTCTTGATCAGCCGGCTGCCAAGGCTGGTCGCGATTTTGC
TAGCAGGTGCAGGGATGAGCATGGCAGGGCTCATCATGCAGCAGCTGAGCCGCAATAAGTTTGTGTCTCCGACAACGGCA
GGTACATTAGACGCCACTCGGCTTGGGATTTTAGTATCGATGTTATTATTCGCAAACGCTTCGATGCTAGAAAAAATGAC
AGTGGCTTTTGCTTTTGCGCTTGCCGGTACCTTTCTTTTCATGCAAATACTAAACCGCATCAAATTTAAAGATGCGATAT
TCATTCCTTTAGTCGGTTTGATGTTCGGAAACATCTTGTCATCTATTACAACGTTTTTCGCTTATCGAGCAGATGTAATA
CAGAATATGTCTGCTTGGTTACAAGGTGACTTTTCGATGGTGATGAAAGGAAGTTATGAACTTCTCTACATCAGCGTTCC
GGTTTTTATCATCGCTTATTTGTACGCTAACCGCTTTACAGTGGCAGGTATGGGTGAGGACTTCTCCAAAAATTTGGGGA
TGAAATACCGGAGTGTTGTCAACATCGGATTGACACTCGTAGCTTTGATTACAGCGACAGTTGTTTTAACGGTAGGGGTT
ATCCCATTCCTTGGGTTGATCATTCCAAACATCGTATCCATTTTCAAAGGAGATCATCTTCAAAAAACATTGCCACATAC
GGCAATGCTTGGCGCTATTTTCTTGCTAGTGTGCGATATCTTGGGAAGGGTCTTGATTTACCCGTACGAGATTTCCATTA
GCTTGATGGTCGGCGTGATTGGAAGTTTTGTTTTCCTCTTCTTGTTGTTTAGGAGGAAAGCTTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1RZZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment