Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I858_RS00450 Genome accession   NZ_CP016540
Coordinates   91569..92945 (+) Length   458 a.a.
NCBI ID   WP_049694515.1    Uniprot ID   -
Organism   Planococcus versutus strain L10.15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86569..97945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS00430 (I858_007390) - 86951..87421 (+) 471 WP_049694511.1 CtsR family transcriptional regulator -
  I858_RS00435 (I858_007385) - 87434..87967 (+) 534 WP_049694512.1 UvrB/UvrC motif-containing protein -
  I858_RS00440 (I858_007380) - 87957..89048 (+) 1092 WP_049694513.1 protein arginine kinase -
  I858_RS00445 (I858_007375) - 89045..91507 (+) 2463 WP_049694514.1 ATP-dependent Clp protease ATP-binding subunit -
  I858_RS00450 (I858_007370) radA 91569..92945 (+) 1377 WP_049694515.1 DNA repair protein RadA Machinery gene
  I858_RS00455 (I858_007365) - 93039..94118 (+) 1080 WP_049694516.1 PIN/TRAM domain-containing protein -
  I858_RS00460 (I858_007360) ispD 94150..94845 (+) 696 WP_049694517.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I858_RS00465 (I858_007355) ispF 94842..95342 (+) 501 WP_049694518.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I858_RS00470 (I858_007350) gltX 95385..96848 (+) 1464 WP_049694519.1 glutamate--tRNA ligase -
  I858_RS00475 (I858_007345) cysE 97161..97823 (+) 663 WP_049694520.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49875.40 Da        Isoelectric Point: 6.4242

>NTDB_id=189018 I858_RS00450 WP_049694515.1 91569..92945(+) (radA) [Planococcus versutus strain L10.15]
MAKKKTKFICQSCGYESARWMGKCPGCAAWNTMTEEVEIAAPKGTRGAFQHSAAVPQKAIPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEDVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKMKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=189018 I858_RS00450 WP_049694515.1 91569..92945(+) (radA) [Planococcus versutus strain L10.15]
ATGGCTAAGAAAAAGACGAAATTTATTTGTCAGTCGTGTGGCTATGAATCAGCCAGATGGATGGGGAAATGCCCCGGTTG
CGCAGCATGGAATACGATGACTGAAGAAGTAGAAATAGCTGCTCCTAAAGGAACACGTGGTGCTTTTCAGCATAGTGCAG
CGGTTCCTCAAAAAGCGATACCGATTAATGCTATCGAAACGCAAGATGAACCGCGAGTAGAAACAGAGCTCAGCGAATTA
AATCGTGTGCTAGGTGGCGGAATTGTACCTGGATCCCTTGTGCTTATTGGAGGAGACCCTGGTATCGGGAAATCAACCTT
GCTGTTGCAGGTTTCAGCGATGCTTGCAAATAGTGGGAACCGGGTATTATATATTTCCGGAGAAGAATCGATTCGACAAA
CGAAATTGCGTGCAGAGCGTCTAGACGCATCATCGTCGGAATTATTTATTTACGCCGAAACAAATTTGGAATTAATTCAT
CATACCATTGAAGACGTTGCTCCTGACTTTGTGATTGTTGATTCAATTCAAACGGTTCATCATCCTGAAGTGACTTCAGC
TCCAGGTAGTGTGACGCAGGTAAGAGAAAGTACGGCAGAATTGATGCGAATCGCGAAAATGAAAAATATCGCAATTTTCC
TCGTTGGCCATGTGACAAAAGAAGGCCAGATTGCAGGACCTCGGATTTTGGAGCATATGGTCGATACGGTGCTGTATTTT
GAAGGCGAACGCCATCACACATACCGTATTTTACGCAGTGTTAAAAACCGTTTTGGTTCGACTAATGAAATTGCGATTTT
TGAGATGCTTCAAGGTGGATTGAAAGAAGTATTAAATCCGTCAGAATTATTTTTACAAGAGAGATCGAGCGGCTCGGCCG
GGTCAACAGTCGTCGCTTCAATGGAAGGAACGCGTCCAATTTTGGTTGAAATCCAAGCATTGGTGACGCCATCTAGTTTC
AATTATCCAAAGCGTATGGCGACTGGGATTGATGTCAATCGCGTCACATTACTAATGGCGGTGTTAGAAAAACGAGTAGG
TATGTTATTGCAAGCACAGGATGCCTATATTAAAGTCGCGGGTGGTGTCAAGCTTGATGAGCCCGCAATTGATTTGGCTG
TATTAGCTAGTATCGTCTCGAGTTTCCGTGACAAAGCACCAAACGTTTACGATTGTATTATCGGAGAAGTAGGATTGACG
GGTGAAGTAAGACGGGTATCACGTATCGAACAGCGAGTTCAAGAAGCAGCGAAGCTTGGATTCAAGCGTGCTATTATTCC
AGCGTCAAATTTGGGTGGCTGGGATTATCCAGAAGGAATTCGCGTAGTCGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AAATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)

AAA domain (AAA_25)

(70-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.848

98.908

0.721
  radA Streptococcus pneumoniae Rx1

61.184

99.563

0.609
  radA Streptococcus pneumoniae D39

61.184

99.563

0.609
  radA Streptococcus pneumoniae R6

61.184

99.563

0.609
  radA Streptococcus pneumoniae TIGR4

61.184

99.563

0.609
  radA Streptococcus mitis NCTC 12261

61.184

99.563

0.609
  radA Streptococcus mitis SK321

61.184

99.563

0.609

Multiple sequence alignment