Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BBI15_RS10755 Genome accession   NZ_CP016539
Coordinates   2119670..2121478 (-) Length   602 a.a.
NCBI ID   WP_068869562.1    Uniprot ID   A0A1C7E763
Organism   Planococcus plakortidis strain DSM 23997     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2114670..2126478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI15_RS10725 (BBI15_06175) - 2114701..2115582 (-) 882 WP_068869556.1 RluA family pseudouridine synthase -
  BBI15_RS10730 (BBI15_06180) - 2115587..2116396 (-) 810 WP_068869557.1 NAD kinase -
  BBI15_RS10735 (BBI15_06185) - 2116393..2117070 (-) 678 WP_068869558.1 GTP pyrophosphokinase -
  BBI15_RS10740 (BBI15_06190) - 2117346..2117915 (+) 570 WP_068869559.1 CYTH domain-containing protein -
  BBI15_RS10745 (BBI15_06195) - 2118012..2118410 (+) 399 WP_068869560.1 globin -
  BBI15_RS10750 (BBI15_06200) - 2118407..2119204 (+) 798 WP_068869561.1 ClpXP adapter SpxH family protein -
  BBI15_RS10755 (BBI15_06205) pepF 2119670..2121478 (-) 1809 WP_068869562.1 oligoendopeptidase F Regulator
  BBI15_RS10760 (BBI15_06210) - 2121532..2122653 (-) 1122 WP_084632831.1 competence protein CoiA -
  BBI15_RS10765 (BBI15_06215) mecA 2122750..2123406 (-) 657 WP_068869564.1 adaptor protein MecA -
  BBI15_RS10770 (BBI15_06220) spxA 2123700..2124095 (-) 396 WP_008429739.1 transcriptional regulator SpxA -
  BBI15_RS10775 (BBI15_06225) - 2124495..2125694 (-) 1200 WP_237150859.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68915.09 Da        Isoelectric Point: 4.6644

>NTDB_id=188997 BBI15_RS10755 WP_068869562.1 2119670..2121478(-) (pepF) [Planococcus plakortidis strain DSM 23997]
MTEKLMTRDQVPAELTWRLEDIFATDSQWEEEFKAVSALAEKAGQYEGTLSGGASALYEALSYKDELSERLRKLYTYAHM
RYDQDTTNSTYQAMDSRIKSLFAKTAAGLSYMTPEILSLDESELNRHVEEHDGLKLYKHALEELNKMRPHVLNAEQEALL
AQLSEVVGASSETFGMLNNADLEFPEIENEDGEKVQITHGNYIRFMESKDRRVREDAFKAVYATYGKFRNTFASTLSGNV
KRDNVHARIRNYSSAREAALSDDHIPETVYDQLVETVNNNLHLLQRYVALRKEVLGVDQVHMYDMYTPLVKEVKMEIPYD
KATGMMLEGLHALGEEYVGIVKSGIDNRWVDVKENKGKRSGAYSSGAYGTNPYILMNWQDNVDNLFTLAHEFGHSVHSYY
TRESQPFVYGDYSIFVAEVASTTNEALLNEHLVNTTEDEQERIYLLNHWLDGFRGTVFRQTMFAEFEHTIHQMDQNGEAL
TADRLTEVYYELNKKYFGEDMAVDEEIGLEWARIPHFYYNYYVFQYATGFSAATALSKKILEEGEPAVERYINEFLKAGS
SDYPIEVLKKAGVDMTSSGPVEEACKVFGQKLEELEALLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=188997 BBI15_RS10755 WP_068869562.1 2119670..2121478(-) (pepF) [Planococcus plakortidis strain DSM 23997]
ATGACGGAAAAATTAATGACCAGAGATCAAGTGCCTGCAGAATTGACATGGCGCTTGGAGGATATCTTTGCTACCGATTC
ACAGTGGGAAGAGGAATTCAAAGCCGTCTCGGCGCTGGCTGAGAAAGCTGGGCAATACGAAGGTACCTTATCAGGCGGGG
CATCTGCTTTATACGAGGCGCTGAGCTATAAAGATGAGTTATCGGAACGCTTGCGCAAACTATACACATATGCCCATATG
CGTTATGACCAGGATACGACGAACTCGACTTATCAGGCGATGGATAGCCGCATCAAATCGCTTTTTGCCAAAACGGCAGC
AGGCTTGTCCTATATGACGCCTGAAATCCTGTCGTTGGACGAATCGGAGCTGAACCGCCATGTCGAAGAACATGATGGCC
TGAAGCTTTATAAGCACGCGCTCGAAGAATTGAACAAGATGCGCCCACATGTATTGAATGCGGAACAGGAAGCGCTGCTT
GCGCAATTATCCGAAGTCGTCGGTGCATCTTCCGAAACGTTCGGCATGCTCAACAATGCTGACTTGGAGTTTCCGGAAAT
CGAGAATGAAGACGGCGAAAAAGTGCAGATCACGCACGGCAACTACATCCGCTTCATGGAAAGCAAGGACCGCCGCGTAC
GCGAAGACGCATTCAAAGCCGTCTATGCGACATACGGGAAATTCCGCAATACATTTGCTTCCACTTTATCGGGAAATGTG
AAACGCGATAATGTCCATGCGAGAATCCGCAATTATTCATCGGCGCGTGAAGCGGCATTATCGGATGACCACATCCCGGA
AACGGTGTACGACCAATTAGTCGAAACCGTCAACAACAACCTGCATTTACTGCAGCGTTATGTAGCGCTGCGCAAAGAAG
TGTTGGGAGTCGACCAAGTCCATATGTATGATATGTACACACCGCTCGTCAAGGAAGTCAAAATGGAGATCCCATACGAC
AAGGCGACAGGCATGATGCTCGAAGGATTGCATGCACTCGGTGAGGAATACGTAGGAATCGTCAAATCCGGCATCGATAA
CCGCTGGGTCGACGTGAAAGAAAACAAAGGCAAACGCAGTGGCGCTTATTCTTCCGGCGCATATGGCACAAACCCATATA
TCTTGATGAACTGGCAAGACAATGTAGACAATCTATTCACTTTGGCACATGAATTCGGCCATAGCGTCCACAGCTATTAC
ACCCGTGAAAGCCAGCCATTCGTCTACGGCGATTATTCCATTTTCGTGGCCGAAGTCGCATCGACGACGAATGAAGCATT
GCTGAACGAACACCTGGTCAACACGACAGAAGATGAGCAGGAGCGTATCTACCTGCTTAACCATTGGCTGGATGGCTTCC
GCGGAACGGTATTCCGCCAGACGATGTTTGCTGAATTCGAGCACACGATCCACCAGATGGACCAAAACGGCGAAGCCTTG
ACGGCTGACCGCTTGACGGAAGTATATTATGAATTGAACAAGAAATACTTCGGTGAAGATATGGCCGTGGATGAGGAAAT
CGGCCTTGAATGGGCGCGCATCCCGCATTTCTACTATAACTACTACGTATTCCAGTATGCGACAGGGTTCAGCGCCGCTA
CGGCATTGAGCAAAAAGATCCTGGAAGAAGGCGAGCCAGCTGTGGAGCGTTATATCAACGAATTCCTGAAGGCCGGCAGT
TCCGATTACCCGATCGAGGTATTGAAGAAAGCGGGCGTCGATATGACTTCATCTGGGCCGGTAGAAGAGGCATGCAAAGT
ATTTGGTCAAAAACTCGAAGAACTCGAAGCTTTATTGCTGAAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(205-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7E763

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.671

0.487

Multiple sequence alignment