Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBI15_RS07990 Genome accession   NZ_CP016539
Coordinates   1574177..1575874 (+) Length   565 a.a.
NCBI ID   WP_068869080.1    Uniprot ID   A0A1C7E6H5
Organism   Planococcus plakortidis strain DSM 23997     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569177..1580874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI15_RS07965 (BBI15_03420) xseB 1569573..1569809 (+) 237 WP_068869076.1 exodeoxyribonuclease VII small subunit -
  BBI15_RS07970 (BBI15_03425) - 1569806..1570684 (+) 879 WP_068869077.1 polyprenyl synthetase family protein -
  BBI15_RS07975 (BBI15_03430) dxs 1570779..1572689 (+) 1911 WP_068869078.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BBI15_RS07980 (BBI15_03435) - 1572686..1573531 (+) 846 WP_068869079.1 TlyA family RNA methyltransferase -
  BBI15_RS07985 (BBI15_03440) ahrC 1573709..1574158 (+) 450 WP_058380870.1 transcriptional regulator AhrC/ArgR -
  BBI15_RS07990 (BBI15_03445) recN 1574177..1575874 (+) 1698 WP_068869080.1 DNA repair protein RecN Machinery gene
  BBI15_RS07995 (BBI15_03450) spo0A 1575908..1576663 (+) 756 WP_068869081.1 sporulation transcription factor Spo0A -
  BBI15_RS08000 (BBI15_03455) - 1576854..1577585 (+) 732 WP_068869082.1 glycerophosphodiester phosphodiesterase -
  BBI15_RS08005 (BBI15_03460) - 1577653..1577889 (-) 237 WP_068869083.1 DUF2627 domain-containing protein -
  BBI15_RS08010 (BBI15_03465) - 1578018..1580060 (+) 2043 WP_068869084.1 sigma-54 interaction domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63674.75 Da        Isoelectric Point: 5.8424

>NTDB_id=188991 BBI15_RS07990 WP_068869080.1 1574177..1575874(+) (recN) [Planococcus plakortidis strain DSM 23997]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIEGNKHPVHKK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
EGYGHTFEKYTKLKREFASYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLEERKRLQNFTKIFESISQAHEAIQG
ESKGLDWVGNAMSELEHAAAVDEQFQEASESVAGAFYQLQDTATEIKRILDQLEFDPERLNEIEQRLGLLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTLLRKQAAAKLAKAIMEQLKELHMGKASFEVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTSVKELTGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=188991 BBI15_RS07990 WP_068869080.1 1574177..1575874(+) (recN) [Planococcus plakortidis strain DSM 23997]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATTATCGATACATTATCGGTCAGTTTTACAGAAGGCATGACAGTCCT
GACAGGGGAAACAGGTGCAGGTAAATCGATCATCATCGATGCCGTGCACTTACTGGCCGGAGGGCGCGGAAGCCAGGAAT
TCATTCGACACGGGGCACAGAAAGCCGAAATCGAAGGCTTGTTCCATATTGAGGGCAATAAGCATCCGGTCCATAAAAAA
CTGGAGGACTTCGGCATCCAGGCGAGCGATGGGGATGTCCTGTTGCGCCGCGAGCTGAACGGCAAAGGGAAAAATGTCTG
CCGCATCAACGGCAAACTCGTGACCATCTCGATCTTGCGCGAAGTGGGGGCTGCTTTGATCGATATCCACGGCCAGCACG
AGACGCAGGAGTTGATGGACGAGAAGCAGCATCTTCATCTATTGGATCAATTTGCCGGGAAGCTGTTGACCAAGGCCAAG
GAGGGGTATGGCCATACATTCGAAAAATATACGAAATTAAAGCGTGAGTTCGCCAGTTATAATGAGAATGAGCAACAGAT
CGCACAGCGCATCGATTTGCTGACCTTCCAACTGCGTGAAATCGAAGAAGCCCAGCTTGTGCCGGGCGAGGAAGAAACGC
TGTTGGAGGAACGCAAACGGCTGCAGAATTTCACCAAGATTTTCGAATCGATTTCACAAGCCCATGAAGCGATTCAAGGG
GAATCGAAAGGGCTGGATTGGGTCGGCAACGCGATGAGCGAACTGGAACATGCCGCAGCGGTCGACGAGCAGTTCCAAGA
GGCTTCGGAATCGGTTGCAGGGGCATTCTATCAGCTCCAGGACACAGCGACTGAAATCAAGCGCATCCTGGATCAGCTGG
AATTCGACCCGGAACGGCTCAATGAAATCGAGCAGCGCCTTGGACTATTGCAATCCTTGAAGCGCAAATACGGCGCGTCG
GTCGAAGATATGCTATTGTATCAGGAAGAGCAGGCCGATGAACTGGACAAATTGCTAAACCGCGACCAACGATTGCGTCT
CGATCAGGAGAAGCTCAAGGAATTGACCGAGGACTTGCGCATCGAAGCGGAAGAACTGACCTTGCTCAGAAAACAGGCGG
CAGCCAAATTGGCGAAAGCGATCATGGAACAATTGAAGGAGCTCCATATGGGCAAAGCTTCATTCGAGGTCCAGTTCAAC
CTGCTGCCGAAAGGGAAATTCGACCGTTTTGGCCAGGACAGCATCGCATTCCATATTTCGACGAATGTTGGGGAACCTTT
GAAGCCGCTGACGAAAGTGGCTTCAGGCGGTGAATTGTCGCGCATGATGCTTGCCTTGAAGACGATCTTTTCCAAGCACC
AGGGCATCACTTCGATCATATTCGATGAAGTCGACACGGGCGTCAGTGGCCGTGTGGCGCAGGCGATTGCGGAGAAAATC
GCTGCCATCGCCCGCCATTCCCAGGTGCTATGCATTTCCCACCTTCCGCAAGTCGCTGCGATGGCAGACCAGCATCTGTT
TATCGAGAAAAAAGTGTCGAAAGACCGCACGACCACATCGGTGAAGGAATTGACCGGGCGTAAGCGTACCGAAGAAATGA
GCCGCATGCTGTCAGGGGCGGAAATCACAGAATTGACCTTACAGCATGCTGACGAACTGCTGACTTTGGCGAGGGACCGG
AAGCTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7E6H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.754

100

0.522

Multiple sequence alignment