Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BBI15_RS02445 Genome accession   NZ_CP016539
Coordinates   463069..464019 (+) Length   316 a.a.
NCBI ID   WP_068871939.1    Uniprot ID   -
Organism   Planococcus plakortidis strain DSM 23997     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458069..469019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI15_RS02425 (BBI15_14085) - 459302..460021 (+) 720 WP_068871932.1 VOC family protein -
  BBI15_RS02430 (BBI15_14090) hflX 460125..461396 (+) 1272 WP_068871934.1 GTPase HflX -
  BBI15_RS02435 (BBI15_14095) - 461576..462451 (+) 876 WP_068871936.1 DUF6612 family protein -
  BBI15_RS02445 (BBI15_14105) ceuB 463069..464019 (+) 951 WP_068871939.1 ABC transporter permease Machinery gene
  BBI15_RS02450 (BBI15_14110) - 464012..464962 (+) 951 WP_068871941.1 iron chelate uptake ABC transporter family permease subunit -
  BBI15_RS02455 (BBI15_14115) - 464959..465720 (+) 762 WP_068871943.1 ABC transporter ATP-binding protein -
  BBI15_RS02460 (BBI15_14120) - 465851..466498 (+) 648 WP_068872671.1 phosphatase PAP2 family protein -
  BBI15_RS02465 (BBI15_14125) - 466921..468204 (-) 1284 WP_068871945.1 ammonium transporter -
  BBI15_RS02470 (BBI15_14130) - 468217..468558 (-) 342 WP_068871947.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34908.27 Da        Isoelectric Point: 10.1518

>NTDB_id=188980 BBI15_RS02445 WP_068871939.1 463069..464019(+) (ceuB) [Planococcus plakortidis strain DSM 23997]
MKKRILIPILIILSFVSLFVGVSSITPLDLLDFQSEETQIFLISRFPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMGVAFLFALGGTFLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYMYANRFTVAGMGEDFSKNLGLKYRSVVNIGLTLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEITISLMVGVIGSFIFLIMLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=188980 BBI15_RS02445 WP_068871939.1 463069..464019(+) (ceuB) [Planococcus plakortidis strain DSM 23997]
ATGAAAAAACGTATTCTAATACCCATATTGATCATTCTCTCTTTCGTCTCCCTGTTTGTCGGAGTCAGCAGCATCACCCC
GCTGGATCTTCTCGATTTTCAATCGGAAGAAACGCAGATTTTTCTCATCAGCCGCTTTCCGCGCCTGGTCGCGATTTTAC
TGGCGGGAGCGGGCATGAGCATGGCTGGGCTCATCATGCAGCAATTGAGCCGCAATAAATTCGTCTCGCCAACCACTGCG
GGGACGCTCGATGCGACGCGCCTCGGGATTCTCGTTTCGATGCTGTTGTTCGCAAATGCCTCCATGCTCGAGAAAATGGG
CGTGGCGTTCTTGTTTGCTCTCGGCGGCACGTTCTTGTTCATGCAAATTCTCAACCGCATCAAGTTCAAGGATGCGATCT
TCATTCCGCTGATCGGCTTGATGTTCGGCAATATCCTGTCGTCGATCACCACATTTTTCGCCTACCGGGCAGATGTCATC
CAGAACATGTCGGCTTGGCTGCAGGGCGATTTTTCGATGGTCATGAAAGGCAGCTATGAACTTCTCTACATAAGTGTACC
GGTCTTCATCATCGCCTATATGTACGCCAACCGTTTTACGGTCGCGGGAATGGGCGAGGATTTCTCGAAGAACCTCGGCC
TCAAATACCGCAGTGTCGTCAATATCGGCTTGACCTTGGTCGCGCTCATCACGGCAACCGTGGTCTTGACAGTCGGCATG
ATCCCGTTCCTTGGCTTGATCATCCCGAACATCGTATCCATCTTCAAAGGAGACCACCTCCAGAAAACCTTGCCGCATAC
GGCGATGCTCGGGGCCATCTTCCTGTTGGTCTGCGACATTCTCGGGCGTGTCTTGATTTATCCGTATGAGATCACGATCA
GCCTGATGGTCGGCGTTATCGGAAGCTTTATCTTCCTGATCATGTTGTTTAGGAGGAAAGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

99.051

0.532

Multiple sequence alignment