Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBI15_RS00495 Genome accession   NZ_CP016539
Coordinates   100658..102040 (+) Length   460 a.a.
NCBI ID   WP_068871296.1    Uniprot ID   A0A1C7EAY0
Organism   Planococcus plakortidis strain DSM 23997     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95658..107040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI15_RS00470 (BBI15_12130) - 95676..95921 (+) 246 WP_068871286.1 hypothetical protein -
  BBI15_RS00475 (BBI15_12135) - 96061..96546 (+) 486 WP_068871288.1 CtsR family transcriptional regulator -
  BBI15_RS00480 (BBI15_12140) - 96543..97076 (+) 534 WP_068871290.1 UvrB/UvrC motif-containing protein -
  BBI15_RS00485 (BBI15_12145) - 97066..98157 (+) 1092 WP_068871292.1 protein arginine kinase -
  BBI15_RS00490 (BBI15_12150) - 98154..100598 (+) 2445 WP_068871294.1 ATP-dependent Clp protease ATP-binding subunit -
  BBI15_RS00495 (BBI15_12155) radA 100658..102040 (+) 1383 WP_068871296.1 DNA repair protein RadA Machinery gene
  BBI15_RS00500 (BBI15_12160) - 102143..103243 (+) 1101 WP_068871298.1 PIN/TRAM domain-containing protein -
  BBI15_RS00505 (BBI15_12165) ispD 103256..103945 (+) 690 WP_068871300.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBI15_RS00510 (BBI15_12170) ispF 103948..104448 (+) 501 WP_068871302.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBI15_RS00515 (BBI15_12175) gltX 104491..105954 (+) 1464 WP_068871304.1 glutamate--tRNA ligase -
  BBI15_RS00520 (BBI15_12180) cysE 106264..106938 (+) 675 WP_068871306.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50226.10 Da        Isoelectric Point: 7.1423

>NTDB_id=188979 BBI15_RS00495 WP_068871296.1 100658..102040(+) (radA) [Planococcus plakortidis strain DSM 23997]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGVFQHSAPQIAQKATPINSIETKEEPRTKMEMDE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLDAVSGDLLIFAETNLELI
HHTIEEVAPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDIAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPKSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=188979 BBI15_RS00495 WP_068871296.1 100658..102040(+) (radA) [Planococcus plakortidis strain DSM 23997]
ATGGCGAAGAAAAAAATAAAGTTCATCTGCCAGTCCTGCGGTTATGAATCTGCCAAATGGATGGGGAAATGCCCAGGTTG
TGCAGCATGGAATACGATGACAGAAGAAACGGAAGTTGCAGCACCGAAAGGCACAAGGGGCGTATTCCAACATAGCGCGC
CGCAAATCGCCCAAAAAGCGACACCGATCAATTCGATCGAAACGAAAGAAGAGCCAAGGACAAAAATGGAAATGGATGAA
TTGAACCGTGTGCTCGGCGGAGGCATTGTTTCGGGTTCTCTCGTGTTAATTGGGGGCGACCCAGGGATCGGGAAATCGAC
TTTGCTCTTGCAAGTATCGGCGCTTCTTGCGAAAGCTGGCAAGAAAGTGTTGTACATTTCAGGGGAGGAGTCGATTCGCC
AGACAAAAATGCGGGCGGAGCGGCTGGATGCGGTGTCAGGAGACTTATTGATTTTTGCAGAAACCAATTTGGAGCTGATC
CATCATACGATTGAAGAAGTAGCGCCGGATTTCGTGATTGTCGATTCGATCCAGACGGTCTATCATCCCGAAGTGACCTC
TGCACCCGGCAGCGTGACACAAGTGCGCGAAAGTACGGCGGAATTGATGCGAGTAGCGAAAACGAAAAACATCGCGATTT
TCCTGGTCGGGCACGTGACGAAAGAAGGCCAGATCGCAGGGCCCCGTATTTTGGAACATATGGTGGATACCGTGCTTTAT
TTTGAAGGGGAACGCCACCACACGTACCGTATTTTGCGCAGTGTGAAAAACCGCTTCGGTTCGACGAATGAAATTGCGAT
TTTTGAGATGCTGCAAGGTGGATTGAAAGAAGTATTGAATCCGTCCGAGCTGTTTTTGCAGGAACGTTCAAGCGGCACAG
CGGGATCGACGGTTGTCGCTTCCATGGAAGGGACACGGCCGATACTGGTGGAGATTCAGGCATTGGTGACGCCGTCGAGT
TTTAATTATCCGAAGCGGATGGCGACTGGAATTGACCAAAACCGGGTATCGTTATTAATGGCGGTGCTGGAGAAGCGCGT
CGGTTTGATGCTGCAGTCACAAGATGCATATATTAAAGTGGCAGGCGGCGTGAAGCTGGATGAGCCGGCGATCGATTTGG
CGGTGCTCGCGAGCATCGTCTCGAGTTTCCGGGATATTGCGCCGAAAGTGGATGATTGCATTATCGGGGAAGTCGGGTTG
ACCGGTGAGGTGCGCCGGGTGTCGCGCATCGAACAGCGCGTGCAGGAAGCAGCGAAGCTTGGATTCAAGCGTGCCATAAT
CCCGAAATCGAATATGGGCGGTTGGGATTTTCCGGAAGGAATCCGCGTCGTTGGTGTTGAAACTATAAACGAGGCGTTGA
AGGAATTATTCCCGCAACAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-223)

Subunit ChlI of Mg-chelatase (ChlI)

(356-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7EAY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.026

98.696

0.711
  radA Streptococcus pneumoniae Rx1

61.22

99.783

0.611
  radA Streptococcus pneumoniae D39

61.22

99.783

0.611
  radA Streptococcus pneumoniae R6

61.22

99.783

0.611
  radA Streptococcus pneumoniae TIGR4

61.22

99.783

0.611
  radA Streptococcus mitis NCTC 12261

61.22

99.783

0.611
  radA Streptococcus mitis SK321

61.22

99.783

0.611

Multiple sequence alignment