Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBI11_RS07735 Genome accession   NZ_CP016538
Coordinates   1537451..1539148 (+) Length   565 a.a.
NCBI ID   WP_068462079.1    Uniprot ID   -
Organism   Planococcus maritimus strain DSM 17275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532451..1544148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI11_RS07710 (BBI11_08570) xseB 1532851..1533087 (+) 237 WP_068462072.1 exodeoxyribonuclease VII small subunit -
  BBI11_RS07715 (BBI11_08575) - 1533084..1533962 (+) 879 WP_068462073.1 polyprenyl synthetase family protein -
  BBI11_RS07720 (BBI11_08580) dxs 1534056..1535963 (+) 1908 WP_068462075.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BBI11_RS07725 (BBI11_08585) - 1535960..1536805 (+) 846 WP_068462077.1 TlyA family RNA methyltransferase -
  BBI11_RS07730 (BBI11_08590) ahrC 1536983..1537432 (+) 450 WP_058380870.1 transcriptional regulator AhrC/ArgR -
  BBI11_RS07735 (BBI11_08595) recN 1537451..1539148 (+) 1698 WP_068462079.1 DNA repair protein RecN Machinery gene
  BBI11_RS07740 (BBI11_08600) spo0A 1539182..1539940 (+) 759 WP_068462080.1 sporulation transcription factor Spo0A -
  BBI11_RS07745 (BBI11_08605) - 1540131..1540889 (+) 759 WP_068462083.1 glycerophosphodiester phosphodiesterase -
  BBI11_RS07750 (BBI11_08610) - 1540930..1541166 (-) 237 WP_068462085.1 DUF2627 domain-containing protein -
  BBI11_RS07755 (BBI11_08615) - 1541295..1543337 (+) 2043 WP_068462086.1 sigma-54 interaction domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63733.71 Da        Isoelectric Point: 5.8385

>NTDB_id=188953 BBI11_RS07735 WP_068462079.1 1537451..1539148(+) (recN) [Planococcus maritimus strain DSM 17275]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIDSAAHPVHRK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFSGKLLTKAK
ESYNHTFEKYTKLKREFATYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLDERKRLQNFTKIYESISQAHEAIQG
ESKGLDWVGNAMSELEHAASVDEQFQEASESVAGAFYQLQDTSTEIKRILDQLEFDPERLNDIEQRLALLQSLKRKYGAS
VEDMLLYQEEQTDELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAATKLSKAIMEQLKELHMGKASFAVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKALTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTAVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=188953 BBI11_RS07735 WP_068462079.1 1537451..1539148(+) (recN) [Planococcus maritimus strain DSM 17275]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATCATTGATACATTATCGGTCAGTTTTACAGAAGGCATGACCGTTTT
GACAGGAGAAACCGGTGCAGGAAAATCGATTATTATCGATGCTGTGCATTTATTGGCAGGTGGACGAGGAAGCCAGGAAT
TTATTCGCCACGGGGCGCAAAAAGCTGAAATTGAAGGCTTGTTCCATATCGACAGTGCGGCGCATCCTGTCCATCGCAAG
CTCGAGGATTTTGGCATCCAGGCGAGCGACGGCGATGTATTATTACGGCGTGAGTTGAACGGCAAAGGCAAAAATGTCTG
CCGCATCAACGGCAAGCTTGTGACCATTTCCATTTTGCGTGAAGTGGGGGCTGCATTGATTGATATCCACGGCCAGCACG
AAACCCAGGAATTGATGGATGAGAAACAACATTTACATTTATTGGATCAATTTTCCGGGAAACTTCTGACCAAAGCAAAA
GAAAGCTATAATCATACGTTTGAAAAATATACAAAACTAAAGCGAGAATTTGCGACTTATAACGAAAACGAGCAACAGAT
TGCCCAGCGTATTGATTTGCTGACATTTCAATTGCGTGAAATTGAAGAAGCCCAGCTTGTGCCCGGCGAAGAAGAAACCT
TGCTCGACGAACGTAAACGCTTGCAGAATTTCACCAAAATTTACGAATCGATCTCACAAGCTCATGAAGCGATTCAAGGA
GAGTCGAAAGGACTTGATTGGGTCGGCAATGCCATGAGCGAACTGGAGCATGCCGCATCAGTCGATGAACAATTCCAAGA
GGCTTCGGAATCGGTGGCAGGGGCGTTTTATCAATTGCAGGACACTTCGACAGAAATCAAGCGCATCTTGGATCAATTGG
AATTCGATCCGGAACGGCTAAATGACATCGAACAGCGCCTTGCTTTATTGCAATCTTTGAAACGTAAATACGGCGCGTCG
GTTGAAGATATGCTGTTGTATCAAGAAGAACAGACGGATGAACTGGATAAACTGCTGAATCGCGACCAGCGTTTGCGCCT
CGATCAGGAAAAACTGAAGGAATTGACCGAGGACTTGCGCATCGAAGCGGAAGAATTGACGATGCTCAGAAAACAAGCGG
CCACCAAATTATCGAAAGCGATTATGGAACAATTGAAAGAGCTCCATATGGGCAAAGCGTCATTCGCCGTCCAATTCAAT
TTGCTGCCTAAAGGCAAATTCGACCGCTTCGGCCAGGACAGCATCGCGTTCCATATTTCGACGAATGTCGGGGAGCCGTT
GAAAGCGTTAACGAAAGTGGCATCAGGCGGCGAATTGTCGCGTATGATGCTGGCGCTGAAAACGATTTTCTCCAAGCACC
AAGGCATCACTTCGATCATTTTCGATGAAGTCGATACAGGAGTCAGTGGCCGGGTGGCGCAGGCGATCGCTGAAAAAATC
GCAGCTATTGCCCGCCATTCACAGGTGCTGTGTATTTCGCATCTGCCACAAGTCGCCGCTATGGCAGACCAGCATTTGTT
TATCGAGAAAAAAGTATCAAAAGACCGTACCACGACTGCGGTGAAAGAACTTGCAGGGCGTAAGCGTACGGAAGAAATGA
GCCGCATGCTGTCAGGGGCAGAAATCACTGAACTAACTTTACAGCATGCTGATGAATTGCTGACTTTGGCAAGGGACCGG
AAGTTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.404

100

0.519

Multiple sequence alignment