Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBI11_RS00495 Genome accession   NZ_CP016538
Coordinates   101273..102655 (+) Length   460 a.a.
NCBI ID   WP_068459633.1    Uniprot ID   -
Organism   Planococcus maritimus strain DSM 17275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96273..107655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI11_RS00470 (BBI11_01335) - 96291..96536 (+) 246 WP_068459619.1 hypothetical protein -
  BBI11_RS00475 (BBI11_01340) - 96676..97161 (+) 486 WP_068459627.1 CtsR family transcriptional regulator -
  BBI11_RS00480 (BBI11_01345) - 97158..97691 (+) 534 WP_068459628.1 UvrB/UvrC motif-containing protein -
  BBI11_RS00485 (BBI11_01350) - 97681..98772 (+) 1092 WP_068459629.1 protein arginine kinase -
  BBI11_RS00490 (BBI11_01355) - 98769..101213 (+) 2445 WP_068459631.1 ATP-dependent Clp protease ATP-binding subunit -
  BBI11_RS00495 (BBI11_01360) radA 101273..102655 (+) 1383 WP_068459633.1 DNA repair protein RadA Machinery gene
  BBI11_RS00500 (BBI11_01365) - 102759..103859 (+) 1101 WP_068459636.1 PIN/TRAM domain-containing protein -
  BBI11_RS00505 (BBI11_01370) ispD 103872..104567 (+) 696 WP_068459638.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBI11_RS00510 (BBI11_01375) ispF 104564..105064 (+) 501 WP_058382195.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBI11_RS00515 (BBI11_01380) gltX 105107..106570 (+) 1464 WP_068459640.1 glutamate--tRNA ligase -
  BBI11_RS00520 (BBI11_01385) cysE 106880..107554 (+) 675 WP_068459642.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50225.96 Da        Isoelectric Point: 6.7006

>NTDB_id=188941 BBI11_RS00495 WP_068459633.1 101273..102655(+) (radA) [Planococcus maritimus strain DSM 17275]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGAFQHSAPQIAQKATPINSIETKEEPRTKTEMEE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLDAVSGDLLIFAETNLELI
HHTIEEVEPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDIAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPNSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=188941 BBI11_RS00495 WP_068459633.1 101273..102655(+) (radA) [Planococcus maritimus strain DSM 17275]
ATGGCGAAGAAAAAAATAAAGTTCATCTGCCAATCCTGTGGTTATGAGTCTGCGAAGTGGATGGGGAAATGTCCGGGTTG
TGCAGCTTGGAATACGATGACAGAAGAGACCGAAGTGGCAGCACCGAAAGGCACGAGAGGCGCATTCCAGCACAGCGCGC
CGCAAATTGCCCAAAAAGCGACACCGATCAATTCGATTGAAACAAAAGAAGAGCCGCGAACAAAAACGGAGATGGAAGAG
CTCAACCGTGTACTTGGCGGTGGAATCGTTTCCGGGTCGCTCGTGCTAATTGGCGGCGATCCAGGAATCGGGAAGTCCAC
TTTACTCTTGCAAGTGTCCGCATTGCTTGCGAAAGCGGGCAAGAAAGTGCTGTATATTTCAGGTGAGGAATCCATCCGTC
AGACGAAGATGCGGGCAGAGAGGTTAGATGCAGTGTCTGGAGATTTATTGATTTTTGCGGAAACCAATTTGGAGCTGATT
CATCATACGATTGAAGAAGTAGAGCCAGATTTTGTGATTGTCGATTCGATTCAGACAGTCTATCATCCGGAAGTGACGTC
TGCGCCAGGCAGTGTGACGCAAGTGCGCGAGAGCACAGCGGAATTGATGAGGGTGGCGAAAACCAAAAACATCGCGATTT
TCCTTGTCGGCCACGTGACGAAAGAAGGCCAAATTGCAGGACCGCGTATTTTGGAACACATGGTGGATACGGTGTTGTAT
TTTGAAGGAGAACGTCATCACACGTACCGGATCTTGCGCAGCGTCAAAAACCGTTTTGGCTCGACGAATGAAATCGCGAT
TTTTGAAATGCTGCAAGGCGGGTTAAAGGAAGTATTGAACCCATCCGAGCTATTTCTACAGGAACGTTCGAGCGGAACGG
CAGGATCGACAGTGGTCGCTTCGATGGAAGGGACAAGGCCAATCCTGGTGGAGATTCAGGCATTGGTTACACCATCAAGC
TTTAATTACCCGAAGCGGATGGCGACAGGAATTGATCAGAACCGGGTGTCGTTATTGATGGCGGTACTGGAGAAGCGCGT
CGGGTTGATGTTGCAGTCACAAGATGCATATATCAAAGTAGCAGGCGGCGTAAAGCTGGATGAACCAGCGATCGATTTAG
CAGTGCTCGCGAGCATTGTTTCGAGTTTCCGGGATATTGCGCCGAAAGTAGATGATTGCATTATCGGTGAAGTCGGATTG
ACTGGCGAAGTGCGGCGGGTATCGCGCATCGAGCAACGCGTGCAGGAAGCGGCGAAACTTGGGTTTAAACGCGCTATTAT
TCCAAATTCAAATATGGGTGGCTGGGATTTTCCGGAAGGAATACGCGTCGTAGGTGTGGAAACTATAAACGAGGCGCTGA
AGGAATTATTCCCACAACAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.467

98.696

0.715
  radA Streptococcus pneumoniae Rx1

61.438

99.783

0.613
  radA Streptococcus pneumoniae D39

61.438

99.783

0.613
  radA Streptococcus pneumoniae R6

61.438

99.783

0.613
  radA Streptococcus pneumoniae TIGR4

61.438

99.783

0.613
  radA Streptococcus mitis NCTC 12261

61.438

99.783

0.613
  radA Streptococcus mitis SK321

61.438

99.783

0.613

Multiple sequence alignment