Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBI08_RS07785 Genome accession   NZ_CP016537
Coordinates   1545787..1547484 (+) Length   565 a.a.
NCBI ID   WP_065527935.1    Uniprot ID   A0A1C7DNF1
Organism   Planococcus halocryophilus strain DSM 24743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540787..1552484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS07760 (BBI08_03430) xseB 1541210..1541446 (+) 237 WP_008429975.1 exodeoxyribonuclease VII small subunit -
  BBI08_RS07765 (BBI08_03435) - 1541443..1542324 (+) 882 WP_008499057.1 polyprenyl synthetase family protein -
  BBI08_RS07770 (BBI08_03440) dxs 1542416..1544320 (+) 1905 WP_065528542.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BBI08_RS07775 (BBI08_03445) - 1544317..1545138 (+) 822 WP_065527934.1 TlyA family RNA methyltransferase -
  BBI08_RS07780 (BBI08_03450) ahrC 1545320..1545769 (+) 450 WP_008429983.1 transcriptional regulator AhrC/ArgR -
  BBI08_RS07785 (BBI08_03455) recN 1545787..1547484 (+) 1698 WP_065527935.1 DNA repair protein RecN Machinery gene
  BBI08_RS07790 (BBI08_03460) spo0A 1547542..1548306 (+) 765 WP_008499059.1 sporulation transcription factor Spo0A -
  BBI08_RS07795 (BBI08_03465) - 1548978..1549712 (+) 735 WP_065527936.1 glycerophosphodiester phosphodiesterase -
  BBI08_RS07800 (BBI08_03470) - 1550269..1550502 (-) 234 WP_008499061.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63616.44 Da        Isoelectric Point: 5.0473

>NTDB_id=188917 BBI08_RS07785 WP_065527935.1 1545787..1547484(+) (recN) [Planococcus halocryophilus strain DSM 24743]
MLRELDIRNFAIIDALTVSFAEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLEDERHPVFRK
LEEFGITKSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQYAGKNLTKSK
ESYSHTFDKYMKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEELVQERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSELEHAAAVDETFTGSSETLTSAFYLIQDTGSEIKRILDDMEFDPSRLNEIEQRLAVIQSLKRKYGSS
VEDILLYHEKQTDELDKLVNRDQRFQLDQEKLKEMTEDLRVEAEELTILRKKAAKSLGKAIMEQLKELHMAKASFEVNFD
ILPNARFDRNGHDAITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELDGSERTEEMSRMLSGAEITDLTLQHAKELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=188917 BBI08_RS07785 WP_065527935.1 1545787..1547484(+) (recN) [Planococcus halocryophilus strain DSM 24743]
ATGCTTCGGGAATTAGATATACGCAATTTTGCCATTATCGATGCCTTGACCGTTAGTTTTGCAGAAGGATTAACGGTTTT
GACAGGTGAAACCGGTGCTGGTAAATCCATCATCATCGACGCTGTCCATCTTTTAGCAGGTGGACGGGGAAGCCAAGAGT
TTATTCGACATGGGGCTAAAAAAGCTGAAATCGAAGGACTATTTTCTTTAGAAGATGAACGGCATCCGGTATTTCGCAAA
TTAGAAGAATTCGGCATCACTAAGAGTGATGGCGATATTTTGTTGCGTAGAGAATTAAATGATAAAGGTAAAAATGTTTG
TCGTATTAATGGGAAACTTGTAACAATATCGATTTTACGTGAAGTTGGAGCTTCATTAATTGACATACACGGACAACACG
AAACGCAAGAATTGATGGATGAAAAACAACATTTATACTTATTGGACCAGTATGCTGGTAAAAATTTAACGAAGTCCAAA
GAAAGTTATAGTCATACATTCGATAAATACATGAAATTAAAGCGTGAGTTTTCTTCCTATACTGAAAATGAGCAGCAAAT
TGCACAACGGATTGATTTATTAACTTTTCAACTGCAAGAAATTGAAGCGGCAGAATTGGTTATCGGAGAAGAAGAAGAAC
TGGTGCAAGAACGCAAAAAACTGCAAAATTTCAATAAAATTTACGAGTCGATTTCAGCGGCGCATGAAGCTATTCAAGGT
GAAAGTAAAGGCTTGGACTGGATTGGTTCTGCCATGTCTGAACTGGAACACGCAGCAGCTGTAGATGAAACGTTTACAGG
ATCTTCAGAAACATTGACTAGCGCTTTTTATTTGATTCAAGACACCGGCAGTGAAATTAAACGGATTTTAGATGATATGG
AGTTTGATCCTAGCCGATTAAACGAAATTGAACAGCGTTTAGCTGTCATACAATCGTTAAAAAGAAAATATGGGTCTTCC
GTTGAGGATATTTTGCTGTATCATGAAAAGCAGACAGATGAGTTGGATAAATTAGTCAACCGGGATCAACGTTTTCAACT
AGATCAAGAAAAATTAAAAGAAATGACTGAAGATTTACGTGTTGAAGCGGAAGAATTAACGATCTTGCGAAAAAAAGCTG
CGAAAAGTTTAGGCAAAGCGATTATGGAGCAGTTAAAAGAGCTTCATATGGCCAAAGCCTCGTTTGAAGTAAATTTTGAT
ATTTTGCCTAATGCGAGGTTTGACCGAAACGGACATGATGCAATTACGTTCTATATTTCAACCAATCTTGGTGAACCGTT
AAAGCCTTTAACTAAGGTGGCATCAGGTGGAGAATTGTCCCGTATGATGTTGGCGTTGAAAACGATATTTTCAAAGCATC
AAGGGATCACATCAATTATTTTTGATGAAGTGGATACTGGCGTTAGTGGGCGTGTGGCACAAGCCATTGCAGAAAAAATT
GCGGCCATTTCAGTTGATTCTCAAGTATTATGCATTTCCCATTTGCCCCAAGTTGCCGCGATGGCTGATCAGCATTTGTT
TATTGAAAAGAAAGTCGACAAGCAGCGGACAACTACCGCTGTAACCGAACTTGACGGTAGCGAACGAACAGAAGAAATGA
GTCGAATGCTGTCAGGCGCCGAAATCACTGACTTGACTTTACAACATGCAAAAGAATTACTTTCTTTAGCAGCAGATCGT
AAATTATTGATGAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DNF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.105

100

0.526

Multiple sequence alignment