Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BBI08_RS02265 Genome accession   NZ_CP016537
Coordinates   431979..432929 (+) Length   316 a.a.
NCBI ID   WP_040851106.1    Uniprot ID   -
Organism   Planococcus halocryophilus strain DSM 24743     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426979..437929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS02250 (BBI08_14745) hflX 427643..428914 (+) 1272 WP_008498744.1 GTPase HflX -
  BBI08_RS02255 (BBI08_14750) - 428959..430677 (-) 1719 WP_040851104.1 ABC transporter ATP-binding protein -
  BBI08_RS02260 (BBI08_14755) - 430847..431710 (+) 864 WP_008498746.1 DUF6612 family protein -
  BBI08_RS02265 (BBI08_14760) ceuB 431979..432929 (+) 951 WP_040851106.1 ABC transporter permease Machinery gene
  BBI08_RS02270 (BBI08_14765) - 432922..433872 (+) 951 WP_008498748.1 iron chelate uptake ABC transporter family permease subunit -
  BBI08_RS02275 (BBI08_14770) - 433869..434630 (+) 762 WP_008498749.1 ABC transporter ATP-binding protein -
  BBI08_RS02280 (BBI08_14775) - 434652..435602 (+) 951 WP_008498750.1 siderophore ABC transporter substrate-binding protein -
  BBI08_RS02285 (BBI08_14780) - 435657..436952 (-) 1296 WP_008498751.1 ammonium transporter -
  BBI08_RS02290 (BBI08_14785) - 436965..437306 (-) 342 WP_008498752.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34932.18 Da        Isoelectric Point: 10.0983

>NTDB_id=188908 BBI08_RS02265 WP_040851106.1 431979..432929(+) (ceuB) [Planococcus halocryophilus strain DSM 24743]
MKKRYLIPILIILSIISLFVGVSSISIVDLFDFQSEETQIFLISRLPRVVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFVIAYLYANRFTVAGMGEDFSKNLGMKYRSVVNIGLTLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMFGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRKVYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=188908 BBI08_RS02265 WP_040851106.1 431979..432929(+) (ceuB) [Planococcus halocryophilus strain DSM 24743]
ATGAAAAAACGCTATTTAATACCAATATTAATCATACTGTCGATCATTTCCTTGTTTGTCGGTGTGAGCAGTATCAGTAT
AGTTGATTTATTTGACTTCCAATCGGAAGAGACACAAATATTCTTAATTAGCCGTCTGCCGCGGGTGGTTGCGATTTTGC
TGGCGGGTGCAGGAATGAGTATGGCAGGACTCATTATGCAGCAGTTAAGTCGCAATAAATTCGTGTCTCCGACAACAGCA
GGTACATTAGATGCTACTCGGCTTGGTATTCTCGTATCCATGCTTTTGTTCGCAAATGCGTCGATGCTAGAAAAAATGAC
AGTAGCTTTTGCTTTTGCACTTGCTGGAACATTTCTTTTCATGCAAATTCTTAATCGCATCAAATTTAAAGATGCGATAT
TTATTCCTTTAGTTGGGTTGATGTTTGGGAACATCTTGTCATCCATTACAACATTTTTCGCTTATCGAGCAGATGTTATT
CAAAACATGTCTGCTTGGTTACAAGGTGACTTTTCCATGGTTATGAAAGGAAGTTATGAACTTCTCTACATCAGTGTGCC
GGTATTTGTTATCGCCTATCTTTATGCTAACCGATTTACGGTAGCTGGAATGGGCGAAGATTTCTCAAAGAATTTGGGCA
TGAAATATCGCAGTGTTGTAAACATCGGATTGACACTCGTAGCCTTGATTACGGCGACAGTTGTTTTGACGGTAGGGGTT
ATCCCGTTTCTTGGGTTGATTATCCCGAACATCGTCTCGATCTTTAAAGGAGATCATCTTCAAAAAACATTGCCCCATAC
GGCAATGTTTGGCGCTATTTTCTTATTAGTGTGCGATATTTTGGGAAGAGTACTAATTTACCCGTACGAAATCTCCATCA
GCTTGATGGTGGGCGTAATCGGAAGCTTTATTTTCCTCTTCTTATTGTTTAGGAGGAAAGTATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.035

99.051

0.525

Multiple sequence alignment