Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBI08_RS00490 Genome accession   NZ_CP016537
Coordinates   103581..104957 (+) Length   458 a.a.
NCBI ID   WP_040850767.1    Uniprot ID   A0A1C7DSY1
Organism   Planococcus halocryophilus strain DSM 24743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98581..109957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS00470 (BBI08_12965) - 98963..99433 (+) 471 WP_008497400.1 CtsR family transcriptional regulator -
  BBI08_RS00475 (BBI08_12970) - 99446..99979 (+) 534 WP_008497401.1 UvrB/UvrC motif-containing protein -
  BBI08_RS00480 (BBI08_12975) - 99969..101060 (+) 1092 WP_008497402.1 protein arginine kinase -
  BBI08_RS00485 (BBI08_12980) clpC 101057..103519 (+) 2463 WP_065528387.1 ATP-dependent protease ATP-binding subunit ClpC -
  BBI08_RS00490 (BBI08_12985) radA 103581..104957 (+) 1377 WP_040850767.1 DNA repair protein RadA Machinery gene
  BBI08_RS00495 (BBI08_12990) - 105051..106130 (+) 1080 WP_008497404.1 PIN/TRAM domain-containing protein -
  BBI08_RS00500 (BBI08_12995) ispD 106161..106856 (+) 696 WP_008497405.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBI08_RS00505 (BBI08_13000) ispF 106853..107353 (+) 501 WP_008497406.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBI08_RS00510 (BBI08_13005) gltX 107396..108859 (+) 1464 WP_008497407.1 glutamate--tRNA ligase -
  BBI08_RS00515 (BBI08_13010) epsC 109172..109834 (+) 663 WP_008497409.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49952.34 Da        Isoelectric Point: 6.4242

>NTDB_id=188906 BBI08_RS00490 WP_040850767.1 103581..104957(+) (radA) [Planococcus halocryophilus strain DSM 24743]
MAKKKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVQAPKGTRGAFQHSASVPQKATPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEDVAPDFVIIDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=188906 BBI08_RS00490 WP_040850767.1 103581..104957(+) (radA) [Planococcus halocryophilus strain DSM 24743]
ATGGCTAAGAAAAAGACTAAATTCATTTGTCAGTCGTGTGGCTATGAATCGGCCAGATGGATGGGGAAATGTCCGGGGTG
CGCATCATGGAATACGATGACAGAAGAAGTAGAAGTCCAAGCTCCTAAAGGAACACGCGGTGCTTTTCAACATAGTGCGT
CTGTTCCGCAAAAAGCGACGCCGATCAATGCGATTGAAACACAAGACGAACCACGAGTAGAAACGGAACTAAGCGAATTA
AACCGTGTACTTGGTGGAGGCATTGTGCCAGGATCACTAGTATTAATTGGGGGAGACCCGGGTATTGGGAAATCGACATT
GCTGTTACAAGTTTCAGCGATGCTTGCAAATAGTGGAAACCGGGTATTATATATTTCCGGAGAAGAATCAATTCGCCAAA
CAAAATTACGAGCAGAGCGTTTAGATGCGTCATCTTCAGAGTTGTTTATCTATGCTGAAACAAATCTTGAACTGATTCAT
CACACCATTGAAGATGTAGCACCTGATTTTGTTATTATCGATTCAATTCAGACTGTTCACCACCCGGAAGTCACTTCTGC
ACCGGGTAGTGTGACGCAAGTAAGAGAAAGTACGGCAGAATTGATGCGAATCGCCAAGACAAAAAATATTGCCATTTTCC
TAGTTGGACACGTAACCAAAGAAGGACAAATTGCAGGACCACGTATTTTAGAGCATATGGTTGATACGGTGTTGTATTTC
GAAGGTGAACGCCATCACACATACCGCATTTTACGTAGTGTGAAAAACCGTTTTGGTTCTACGAATGAAATTGCGATTTT
TGAAATGCTTCAAAGTGGATTAAAAGAAGTGTTGAATCCATCTGAATTATTTTTACAAGAGCGTTCGAGTGGGTCAGCAG
GCTCAACCGTTGTTGCTTCAATGGAAGGAACAAGGCCAATTTTAGTTGAAATTCAAGCATTGGTAACACCTTCAAGCTTT
AATTATCCGAAACGGATGGCAACGGGAATTGACGTCAATCGTGTGACCTTACTGATGGCAGTACTAGAAAAGCGCGTAGG
TATGCTTTTGCAAGCGCAGGACGCTTACATTAAAGTTGCGGGTGGCGTGAAGCTTGATGAACCAGCAATTGATTTGGCTG
TGTTGGCAAGTATTGTCTCAAGCTTCCGTGATAAAGCGCCAAATGTTTATGATTGTATAATCGGCGAAGTTGGATTGACC
GGGGAAGTTAGACGCGTATCGCGTATCGAGCAGCGCGTTCAAGAAGCGGCGAAACTAGGCTTTAAGCGTGCAATTATTCC
TGCATCAAATTTAGGTGGCTGGGATTATCCGGAAGGAATTCGTGTAGTGGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AGATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DSY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.627

98.908

0.718
  radA Streptococcus pneumoniae Rx1

61.623

99.563

0.614
  radA Streptococcus pneumoniae D39

61.623

99.563

0.614
  radA Streptococcus pneumoniae R6

61.623

99.563

0.614
  radA Streptococcus pneumoniae TIGR4

61.623

99.563

0.614
  radA Streptococcus mitis NCTC 12261

61.623

99.563

0.614
  radA Streptococcus mitis SK321

61.623

99.563

0.614

Multiple sequence alignment