Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBH88_RS08500 Genome accession   NZ_CP016534
Coordinates   1701913..1703610 (+) Length   565 a.a.
NCBI ID   WP_006830433.1    Uniprot ID   -
Organism   Planococcus antarcticus DSM 14505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696913..1708610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS08475 (BBH88_13005) xseB 1697295..1697531 (+) 237 WP_006830438.1 exodeoxyribonuclease VII small subunit -
  BBH88_RS08480 (BBH88_13000) - 1697528..1698409 (+) 882 WP_006830437.1 polyprenyl synthetase family protein -
  BBH88_RS08485 (BBH88_12995) dxs 1698503..1700407 (+) 1905 WP_065536955.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BBH88_RS08490 (BBH88_12990) - 1700404..1701225 (+) 822 WP_006830435.1 TlyA family RNA methyltransferase -
  BBH88_RS08495 (BBH88_12985) ahrC 1701447..1701896 (+) 450 WP_006830434.1 transcriptional regulator AhrC/ArgR -
  BBH88_RS08500 (BBH88_12980) recN 1701913..1703610 (+) 1698 WP_006830433.1 DNA repair protein RecN Machinery gene
  BBH88_RS08505 (BBH88_12975) spo0A 1703693..1704490 (+) 798 WP_006830432.1 sporulation transcription factor Spo0A -
  BBH88_RS08515 (BBH88_12965) - 1705913..1706647 (+) 735 WP_065536953.1 glycerophosphodiester phosphodiesterase family protein -
  BBH88_RS08520 (BBH88_12960) - 1706658..1706891 (-) 234 WP_006830430.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63639.23 Da        Isoelectric Point: 5.0403

>NTDB_id=188880 BBH88_RS08500 WP_006830433.1 1701913..1703610(+) (recN) [Planococcus antarcticus DSM 14505]
MLRELDIRNFAIIDALTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLEDEQHPVFRR
LEEFGISWSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLHLLDQFAGKSLTKSK
ESYTHTFDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVLGEEEELVQERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSELEHAASVDETFTGSSETLSSAFYLIQDTGTEIKRILDDMEFDPARLNDIEQRLAVIQSLKRKYGAS
VEDILLYHEKQTDELDKLVNRDQRYQLDQEKLKELTEDLRVEAEELTILRRKAAKSLGKAIMEQLQELHMAKASFEVNFS
VLPNSRFDRNGHDAISFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELDGRERTEEMSRMLSGAEITDLTLQHAEELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=188880 BBH88_RS08500 WP_006830433.1 1701913..1703610(+) (recN) [Planococcus antarcticus DSM 14505]
ATGCTTCGGGAATTGGACATACGTAATTTTGCTATTATCGATGCACTAACTGTCAGCTTTTCTGAAGGGCTGACTGTTTT
GACAGGAGAAACCGGTGCTGGAAAATCCATCATCATTGATGCTGTCCATCTTTTGGCTGGTGGACGTGGAAGTCAGGAGT
TTATTCGGCATGGTGCCAAAAAAGCAGAAATTGAAGGATTGTTTTCATTGGAAGACGAGCAGCATCCGGTATTTCGCAGA
TTAGAGGAATTCGGCATTTCTTGGAGTGATGGCGATATTTTGTTGCGCCGAGAATTGAACGACAAAGGAAAAAATGTCTG
CCGCATCAATGGCAAGCTGGTGACCATCTCCATTTTGAGAGAGGTTGGCGCTTCGCTAATCGATATTCATGGGCAGCATG
AGACGCAAGAATTGATGGATGAAAAACAGCATCTCCACCTATTAGATCAATTTGCTGGAAAGAGTCTAACTAAGTCAAAA
GAAAGCTATACCCACACATTCGATAAGTATACAAAATTAAAACGTGAATTTTCTTCTTATACAGAAAACGAACAACAAAT
CGCACAGCGCATTGATTTGCTGACGTTCCAGCTACAGGAAATCGAAGCGGCGGAATTAGTTCTCGGCGAAGAAGAAGAGC
TGGTTCAAGAACGAAAAAAGTTGCAAAATTTCAATAAGATTTACGAATCGATTTCAGCAGCACACGAAGCGATCCAGGGC
GAAAGCAAAGGTTTGGACTGGATCGGCTCAGCCATGTCTGAACTTGAACACGCCGCATCGGTAGATGAAACCTTCACTGG
TTCTTCTGAAACCCTGTCTAGTGCTTTTTATTTAATTCAAGACACAGGAACGGAAATCAAACGAATTTTAGACGATATGG
AATTTGATCCTGCCCGTTTAAATGATATCGAGCAGCGCTTGGCCGTCATTCAATCTCTAAAAAGAAAATATGGTGCTTCC
GTTGAAGACATTTTACTGTATCATGAGAAGCAGACAGATGAATTGGATAAATTGGTCAACCGTGATCAACGCTATCAGCT
GGATCAGGAAAAGTTAAAGGAGTTAACTGAAGACTTGCGTGTCGAAGCGGAAGAACTGACCATTCTTCGCCGAAAAGCCG
CCAAAAGCCTAGGCAAGGCTATCATGGAACAATTACAGGAATTACATATGGCAAAAGCATCTTTTGAAGTGAATTTTTCT
GTATTGCCAAATAGCCGTTTCGACCGGAATGGCCATGATGCGATTTCTTTTTACATCTCGACAAATCTTGGTGAGCCACT
GAAACCTTTAACCAAAGTGGCATCAGGTGGGGAATTGTCCCGTATGATGCTGGCGTTGAAAACTATTTTTTCCAAGCACC
AAGGCATTACGTCCATTATTTTTGATGAAGTGGATACTGGCGTCAGCGGACGGGTAGCGCAAGCGATTGCTGAGAAGATA
GCGGCCATATCGGTCCATTCCCAGGTGCTGTGCATCTCGCATCTGCCTCAAGTTGCTGCTATGGCAGACCAGCATTTATT
TATTGAGAAAAAAGTAGACAAACAACGTACCACCACAGCAGTCACAGAACTGGATGGACGTGAACGAACCGAAGAAATGA
GCCGAATGCTGTCAGGCGCAGAAATAACAGATCTTACCCTTCAGCATGCGGAAGAATTGCTGTCGCTTGCAGCGGACCGG
AAACTATTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.632

100

0.531

Multiple sequence alignment