Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BBH88_RS07795 Genome accession   NZ_CP016534
Coordinates   1560185..1562602 (+) Length   805 a.a.
NCBI ID   WP_065537009.1    Uniprot ID   -
Organism   Planococcus antarcticus DSM 14505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1555185..1567602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS07775 (BBH88_13705) cymR 1556790..1557206 (+) 417 WP_065537011.1 cysteine metabolism transcriptional regulator CymR -
  BBH88_RS07780 (BBH88_13700) - 1557221..1558354 (+) 1134 WP_065537010.1 cysteine desulfurase family protein -
  BBH88_RS07785 (BBH88_13695) mnmA 1558368..1559486 (+) 1119 WP_006828736.1 tRNA 2-thiouridine(34) synthase MnmA -
  BBH88_RS07790 (BBH88_13690) - 1559501..1560160 (+) 660 WP_040851910.1 tetratricopeptide repeat protein -
  BBH88_RS07795 (BBH88_13685) recD2 1560185..1562602 (+) 2418 WP_065537009.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BBH88_RS07800 (BBH88_13680) alaS 1563311..1565935 (+) 2625 WP_006828733.1 alanine--tRNA ligase -
  BBH88_RS07805 (BBH88_13675) - 1566025..1566291 (+) 267 WP_006828732.1 IreB family regulatory phosphoprotein -
  BBH88_RS07810 (BBH88_13670) ruvX 1566294..1566710 (+) 417 WP_065537008.1 Holliday junction resolvase RuvX -
  BBH88_RS07815 (BBH88_13665) - 1566724..1567032 (+) 309 WP_006828730.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89755.17 Da        Isoelectric Point: 5.3831

>NTDB_id=188877 BBH88_RS07795 WP_065537009.1 1560185..1562602(+) (recD2) [Planococcus antarcticus DSM 14505]
MTGQIDLFQEEKQFVLGRPVVSIFHNPRNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLSLEEQYRFTGVVKNHPRYGVQ
FQVETFSKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKEAIKKILEDPDALDKVPRLSDDKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDILTKNPFKLIEEIEGIGFQRADELGTKLGITGSHPDRIKAAILHILNQAS
LSDGHVYVDAKTLIPLVKEMLEARQQGEIAIEAISKAAIELGEEGKVAGEETRLYLPSLYYSEVGIATKLETLLAAQENR
TKFPSSEVRKALGEAEERLGVNYAETQVDAIENSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKNGQLPNDITAKTADRSFIKAGIEQIPSVVEK
VVKSALSKGHSIKDIQVLAPMYKGPAGIDVLNRLIQEMVNPNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFSTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPSVFRYGVERTDDAQRMTTLKNRLAVAAEEPKTEQQTMLKAEEKQSKPISLTTENVHAIHPMIGMEGITPQ
KFIEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=188877 BBH88_RS07795 WP_065537009.1 1560185..1562602(+) (recD2) [Planococcus antarcticus DSM 14505]
ATGACCGGACAAATCGACTTATTTCAAGAAGAAAAGCAGTTTGTATTAGGGCGTCCTGTCGTCTCGATTTTTCACAATCC
CCGAAATTTATTCTCCATTGCCAAAGTGAAAATTCAAGAAACCAATACCCCATATACCGAAAAAGAAATCATTGTGTCTG
GCTATTTTCCAATGCTATCGCTCGAAGAACAGTATCGTTTTACCGGCGTAGTGAAAAATCATCCGCGTTATGGTGTTCAA
TTTCAAGTGGAAACCTTCTCCAAAGAAGTACCAGAAACTGAGCAAGGGATTATCCATTATTTGTCAAGTGACATGTTTAA
TGGCATTGGTCGGAAAACGGCGGAAACAATCGTCAAAAAACTCGGCAAAGAAGCTATTAAAAAAATTCTGGAAGACCCGG
ATGCACTTGATAAGGTGCCGCGTTTGTCTGATGATAAAAAAGACACCATCCGTGCGACTTTGCAGATGAACCTTGGTCTT
GAGCGTGTCATGATCCAACTCAACGACTGGGGCTTTGGCCCGCAAGTCGGCATGCGGATATACCAAGCTTACCGCGAAGA
AACGATTGATATTCTAACAAAAAATCCGTTCAAACTTATTGAAGAAATTGAAGGAATCGGTTTTCAACGTGCTGATGAAC
TCGGAACAAAACTCGGCATCACCGGCAGTCATCCGGATCGTATCAAAGCGGCGATTTTGCATATTCTCAACCAAGCTTCC
CTGTCTGATGGTCATGTCTATGTGGACGCTAAAACCTTGATTCCATTAGTTAAAGAAATGCTCGAAGCACGCCAACAAGG
TGAAATTGCGATTGAAGCAATTTCGAAAGCCGCTATCGAATTGGGTGAAGAAGGTAAAGTCGCAGGTGAAGAAACGCGGC
TTTATTTGCCATCGCTATATTATTCAGAAGTCGGGATTGCGACAAAGCTGGAAACTTTGCTTGCCGCACAAGAAAATCGC
ACGAAATTTCCAAGTTCAGAAGTCCGCAAAGCGCTCGGGGAAGCGGAAGAACGTCTTGGGGTCAATTACGCAGAAACGCA
AGTTGACGCAATTGAAAACAGTATCAATTCATCGGTCATGATTTTAACGGGTGGACCAGGTACTGGTAAGACGACGGTCG
TTCGTGGATTGGTAGAAATCTATGCAGAACTGCACGGTTTGTCACTCGATCCAAAAGAATACGCCAAGAAAAAAGAACCA
TTTCCAATTATTTTGGCAGCACCTACGGGACGTGCAGCTAAACGTTTAAGTGAATCAACCGATTTACCGGCGATGACGAT
TCATCGTTTACTAGGCTTTAACGGACAAGAAAAAGATGAAGAAACCGAAAAAGAAATCGAAGGTAAATTGATTATTATCG
ATGAAATGTCAATGGTTGACACTTGGCTTGCCCATCAATTGCTAAAGGCCGTACCAGAAGATGCTCAACTAATTTTCGTC
GGAGACCAAGACCAATTACCACCGGTCGGGCCGGGACAAGTACTAAGAGACCTACTCGAATCAAAACGGATTCCAACTGT
AGAACTGACCGATATTTACCGGCAGTCGTCAGGCTCTTCAATTATTGAACTTGCCCATCAAATGAAAAACGGTCAATTGC
CAAATGACATTACTGCAAAAACAGCAGACCGCTCTTTCATCAAAGCAGGAATTGAACAGATTCCATCTGTCGTTGAAAAA
GTGGTTAAAAGCGCCTTGTCAAAAGGCCATTCCATCAAAGATATTCAAGTTCTAGCGCCTATGTACAAAGGACCAGCAGG
CATTGATGTTTTGAATCGGTTGATTCAGGAGATGGTCAATCCCAATCCAGACGGCAAACGCAAAGAACTGGTATTCGGTG
ACATCACCTATCGTATCGGTGACAAGATCCTCCAGCTTGTCAATCAGCCGGAAAGCAATGTCTTCAATGGCGATATGGGC
GAAGTCGTCGCAATTATGAAAGCAAAAGAAACTGTCGAAAAGCAAGATATGCTAGTGGCTTCTTTTGATGGCATCGAAGT
GACTTACGAACGCAGCGACTTGAATCAACTGACGCTAGCGTACTGCTGCTCGATTCATAAATCACAGGGCTCTGAATTCT
CAACGGTCATTATGCCAGTAGTTCGAGGCTATATGAAAATGCTGCGCCGCAATTTGCTTTATACCGGCATCACACGCAGC
AAAGATTTTCTCATCCTATGTGGCGACCCGAGCGTTTTCCGCTATGGTGTTGAACGCACGGACGACGCGCAGCGGATGAC
CACTTTGAAAAACCGTTTGGCAGTTGCAGCGGAAGAACCGAAAACCGAACAACAAACCATGCTAAAAGCAGAAGAAAAAC
AAAGTAAACCTATCAGCCTAACCACCGAAAACGTCCATGCCATCCACCCAATGATCGGCATGGAAGGCATCACCCCACAG
AAATTTATAGAAGCTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.14

99.13

0.557

Multiple sequence alignment